Strain identifier
version 8.1 (current version)
General
@ref: 62636
BacDive-ID: 156387
keywords: genome sequence, Bacteria, aerobe, mesophilic
description: Tardiphaga robiniae CCUG 61473 is an aerobe, mesophilic bacterium that was isolated from Root nodules of Robinice pseudoacacia.
NCBI tax id
- NCBI tax id: 943830
- Matching level: species
doi: 10.13145/bacdive156387.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Tardiphaga
- species: Tardiphaga robiniae
- full scientific name: Tardiphaga robiniae De Meyer et al. 2012
@ref: 62636
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Bradyrhizobiaceae
genus: Tardiphaga
species: Tardiphaga robiniae
type strain: yes
Morphology
colony morphology
- @ref: 62636
- incubation period: 4 days
Culture and growth conditions
culture temp
- @ref: 62636
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62636
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
- @ref: 62636
- sample type: Root nodules of Robinice pseudoacacia
- sampling date: 2008-10-21
- geographic location: Gent
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Root nodule |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tardiphaga robiniae LMG 26467 | GCA_013359755 | contig | ncbi | 943830 |
| 66792 | Tardiphaga robiniae strain LMG 26467 | 943830.8 | wgs | patric | 943830 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.543 | no |
| flagellated | no | 51.696 | no |
| gram-positive | no | 98.498 | no |
| anaerobic | no | 98.188 | no |
| halophile | no | 92.316 | no |
| spore-forming | no | 95.235 | no |
| glucose-util | yes | 83.031 | no |
| aerobic | yes | 93.224 | no |
| thermophile | no | 98.937 | yes |
| glucose-ferment | no | 90.665 | no |
External links
@ref: 62636
culture collection no.: CCUG 61473, LMG 26467
straininfo link
- @ref: 109635
- straininfo: 371092
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22444281 | Tardiphaga robiniae gen. nov., sp. nov., a new genus in the family Bradyrhizobiaceae isolated from Robinia pseudoacacia in Flanders (Belgium). | De Meyer SE, Coorevits A, Willems A | Syst Appl Microbiol | 10.1016/j.syapm.2012.02.002 | 2012 | Bacterial Proteins/genetics, Bacterial Typing Techniques, Belgium, Bradyrhizobiaceae/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Robinia/*microbiology, Sequence Analysis, DNA | Genetics |
| Phylogeny | 26013968 | Extra-slow-growing Tardiphaga strains isolated from nodules of Vavilovia formosa (Stev.) Fed. | Safronova VI, Kuznetsova IG, Sazanova AL, Kimeklis AK, Belimov AA, Andronov EE, Pinaev AG, Pukhaev AR, Popov KP, Akopian JA, Willems A, Tikhonovich IA | Arch Microbiol | 10.1007/s00203-015-1122-3 | 2015 | Bacterial Typing Techniques, Bradyrhizobiaceae/*classification/genetics/growth & development/isolation & purification/*physiology, DNA, Bacterial/genetics, Fabaceae/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Symbiosis/genetics, Taiwan | Enzymology |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 62636 | Curators of the CCUG | https://www.ccug.se/strain?id=61473 | Culture Collection University of Gothenburg (CCUG) (CCUG 61473) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 109635 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID371092.1 |