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Strain identifier

BacDive ID: 156387

Type strain: Yes

Species: Tardiphaga robiniae

NCBI tax ID(s): 943830 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 62636

BacDive-ID: 156387

keywords: genome sequence, Bacteria, aerobe, mesophilic

description: Tardiphaga robiniae CCUG 61473 is an aerobe, mesophilic bacterium that was isolated from Root nodules of Robinice pseudoacacia.

NCBI tax id

  • NCBI tax id: 943830
  • Matching level: species

doi: 10.13145/bacdive156387.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Nitrobacteraceae
  • genus: Tardiphaga
  • species: Tardiphaga robiniae
  • full scientific name: Tardiphaga robiniae De Meyer et al. 2012

@ref: 62636

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Bradyrhizobiaceae

genus: Tardiphaga

species: Tardiphaga robiniae

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.462

colony morphology

  • @ref: 62636
  • incubation period: 4 days

Culture and growth conditions

culture temp

  • @ref: 62636
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62636
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.805

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.538

Isolation, sampling and environmental information

isolation

  • @ref: 62636
  • sample type: Root nodules of Robinice pseudoacacia
  • sampling date: 2008-10-21
  • geographic location: Gent
  • country: Belgium
  • origin.country: BEL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Root nodule

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tardiphaga robiniae LMG 26467GCA_013359755contigncbi943830
66792Tardiphaga robiniae strain LMG 26467943830.8wgspatric943830

External links

@ref: 62636

culture collection no.: CCUG 61473, LMG 26467

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22444281Tardiphaga robiniae gen. nov., sp. nov., a new genus in the family Bradyrhizobiaceae isolated from Robinia pseudoacacia in Flanders (Belgium).De Meyer SE, Coorevits A, Willems ASyst Appl Microbiol10.1016/j.syapm.2012.02.0022012Bacterial Proteins/genetics, Bacterial Typing Techniques, Belgium, Bradyrhizobiaceae/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Robinia/*microbiology, Sequence Analysis, DNAGenetics
Phylogeny26013968Extra-slow-growing Tardiphaga strains isolated from nodules of Vavilovia formosa (Stev.) Fed.Safronova VI, Kuznetsova IG, Sazanova AL, Kimeklis AK, Belimov AA, Andronov EE, Pinaev AG, Pukhaev AR, Popov KP, Akopian JA, Willems A, Tikhonovich IAArch Microbiol10.1007/s00203-015-1122-32015Bacterial Typing Techniques, Bradyrhizobiaceae/*classification/genetics/growth & development/isolation & purification/*physiology, DNA, Bacterial/genetics, Fabaceae/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Symbiosis/genetics, TaiwanEnzymology

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
62636Curators of the CCUGhttps://www.ccug.se/strain?id=61473Culture Collection University of Gothenburg (CCUG) (CCUG 61473)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes