Strain identifier

BacDive ID: 156386

Type strain: No

Species: Dielma fastidiosa

NCBI tax ID(s): 1034346 (species)

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General

@ref: 62633

BacDive-ID: 156386

keywords: Bacteria, anaerobe, mesophilic

description: Dielma fastidiosa CCUG 61462 is an anaerobe, mesophilic bacterium that was isolated from Human effluent caecum at colonscopy.

NCBI tax id

  • NCBI tax id: 1034346
  • Matching level: species

doi: 10.13145/bacdive156386.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Erysipelotrichia
  • order: Erysipelotrichales
  • family: Erysipelotrichaceae
  • genus: Dielma
  • species: Dielma fastidiosa
  • full scientific name: Dielma fastidiosa Ramasamy et al. 2016

@ref: 62633

domain: Bacteria

phylum: Firmicutes

class: Erysipelotrichia

order: Erysipelotrichales

family: Erysipelotrichaceae

genus: Dielma

species: Dielma fastidiosa

type strain: no

Culture and growth conditions

culture temp

  • @ref: 62633
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62633
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea+hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase+3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate+
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease+3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    62633C10:01.410
    62633C14:01.214
    62633C16:011.916
    62633C18:0418
    62633C16:0 aldehyde2.714.949
    62633C16:1 ω7c215.819
    62633C17:0 anteiso0.616.722
    62633C17:1 ISO I/C16:0 DMA10.216.481
    62633C18:1 ω9c17.817.769
    62633C18:1 ω9c DMA2.218.226
    62633C18:2 ω6,9c/C18:0 ANTE29.917.724
    62633C19:1 ISO I1018.473
    62633unknown 16.9723.416.972
    62633unknown 18.1772.718.177
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
62633+---+---+----+--+-----+------

Isolation, sampling and environmental information

isolation

  • @ref: 62633
  • sample type: Human effluent caecum at colonscopy
  • sampling date: 2011-02-16
  • geographic location: London
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2
#Host#Human
#Host Body Product#Fluids
#Infection#Patient

External links

@ref: 62633

culture collection no.: CCUG 61462

straininfo link

  • @ref: 109634
  • straininfo: 412271

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
62633Curators of the CCUGhttps://www.ccug.se/strain?id=61462Culture Collection University of Gothenburg (CCUG) (CCUG 61462)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68380Automatically annotated from API rID32A
109634Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID412271.1