Archive BacDiveID:10.13145/bacdive156141.20230509.8.1

Strain identifier

BacDive ID: 156141

Type strain:

Species: Oceanisphaera ostreae

Strain Designation: T-w6

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 914151 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 62341

BacDive-ID: 156141

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Oceanisphaera ostreae T-w6 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Seawater in oyster farm.

NCBI tax id

NCBI tax id: 914151
Matching level: species

strain history

@ref: 67771
history: <- JH Yoon, KRIBB

doi: 10.13145/bacdive156141.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Aeromonadales
family: Aeromonadaceae
genus: Oceanisphaera
species: Oceanisphaera ostreae
full scientific name: Oceanisphaera ostreae Choi et al. 2011

@ref: 62341

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Oceanisphaera

species: Oceanisphaera ostreae

strain designation: T-w6

type strain: yes

Morphology

cell morphology

@ref: 67771
gram stain: negative

colony morphology

@ref: 62341
incubation period: 1 day

Culture and growth conditions

culture temp

@ref	growth	type	temperature	range
62341	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance
62341	aerobe
67771	aerobe

Isolation, sampling and environmental information

isolation

@ref	sample type	sampling date	geographic location	country	origin.country	continent
62341	Seawater in oyster farm	2009	South sea	Republic of Korea	KOR	Asia
67771	From seawater of an oyster farm in the South Sea			Republic of Korea	KOR	Asia

isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture
#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	#Marine

taxonmaps

@ref: 69479
File name: preview.99_108971.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_6771;97_46882;98_73996;99_108971&stattab=map
Last taxonomy: Oceanisphaera ostreae subclade
16S sequence: HQ340607
Sequence Identity:
Total samples: 78
soil counts: 8
aquatic counts: 45
animal counts: 24
plant counts: 1

Sequence information

16S sequences

@ref: 67771
description: Oceanisphaera ostreae strain T-w6 16S ribosomal RNA gene, partial sequence
accession: HQ340607
length: 1465
database: ena
NCBI tax ID: 914151

External links

@ref: 62341

culture collection no.: CCUG 60525, KCTC 23422

straininfo link

@ref: 109441
straininfo: 409223

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	21257693	Oceanisphaera ostreae sp. nov., isolated from seawater of an oyster farm, and emended description of the genus Oceanisphaera Romanenko et al. 2003.	Choi WC, Kang SJ, Jung YT, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.029496-0	2011	Aeromonadaceae/classification/genetics/isolation & purification/metabolism, Animals, Aquaculture, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Ostreidae/growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/microbiology	Metabolism
Phylogeny	27460581	Oceanisphaera aquimarina sp. nov., Isolated from Oil-Contaminated Sediment of Ocean Coastal Area from South Korea.	Cho S, Lee SS	Curr Microbiol	10.1007/s00284-016-1103-z	2016	Aeromonadaceae/classification/genetics/isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Geologic Sediments/microbiology, Petroleum/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Water Pollution, Chemical	Metabolism
Phylogeny	28629507	Oceanisphaera marina sp. nov., isolated from a deep-sea seamount.	Liu J, Sun YW, Zhang DD, Li SN, Zhang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001906	2017	Aeromonadaceae/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Pacific Ocean, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry	Transcriptome
Phylogeny	29722644	Oceanisphaera avium sp. nov., isolated from the gut of the cinereous vulture, Aegypius monachus.	Sung H, Kim HS, Lee JY, Kang W, Kim PS, Hyun DW, Tak EJ, Jung MJ, Yun JH, Kim MS, Shin NR, Whon TW, Rho JR, Park SD, Shim HE, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002797	2018	Aeromonadaceae/classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Falconiformes/microbiology, Fatty Acids/chemistry, Gastrointestinal Tract/microbiology, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistry	Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
62341	Curators of the CCUG		https://www.ccug.se/strain?id=60525	Culture Collection University of Gothenburg (CCUG) (CCUG 60525)
67771	Curators of the KCTC		https://kctc.kribb.re.kr/En/Kctc
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
109441	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID409223.1