Strain identifier

BacDive ID: 156140

Type strain: No

Species: Pseudomonas hibiscicola

Strain history: LMG 980 <-- NCPPB 1683 <-- G. Rangaswami.

NCBI tax ID(s): 1279018 (strain), 86189 (species)

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General

@ref: 62337

BacDive-ID: 156140

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Pseudomonas hibiscicola CCUG 60518 is a mesophilic, motile bacterium that was isolated from Plant,Hibiscus rosa-sinensis.

NCBI tax id

NCBI tax idMatching level
86189species
1279018strain

strain history

  • @ref: 67770
  • history: LMG 980 <-- NCPPB 1683 <-- G. Rangaswami.

doi: 10.13145/bacdive156140.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas hibiscicola
  • full scientific name: Pseudomonas hibiscicola Moniz 1963 (Approved Lists 1980)

@ref: 62337

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Stenotrophomonas

species: Stenotrophomonas maltophilia

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes97.29
6948099.989negative

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.996
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
62337-+++-++-+-++---++---

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
62337+----++++-+-++-+-++--

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinenthost species
62337Plant,Hibiscus rosa-sinensis1964IndiaINDAsia
67770Plant (Hibiscus rosa-sinennsis)IndiaINDAsiaHibiscus rosa-sinennsis

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Shrub (Scrub)

Sequence information

16S sequences

  • @ref: 67770
  • description: Pseudomonas hibiscicola gene for 16S rRNA, strain: ATCC 19867
  • accession: AB021405
  • length: 1519
  • database: ena
  • NCBI tax ID: 86189

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792[Pseudomonas] hibiscicola ATCC 19867GCA_000382065scaffoldncbi1279018
66792Stenotrophomonas maltophilia ATCC 198671279018.5wgspatric1279018
66792Stenotrophomonas maltophilia ATCC 198671279018.3wgspatric1279018
66792Stenotrophomonas maltophilia ATCC 198672521172560draftimg1279018

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes87.034no
flagellatedno79.438no
gram-positiveno97.929no
anaerobicno97.961no
aerobicyes89.345no
halophileno94.325no
spore-formingno95.638no
thermophileno99.485no
glucose-utilyes88.795yes
glucose-fermentno90.379yes

External links

@ref: 62337

culture collection no.: CCUG 60518, NCPPB 1683, ATCC 19867, LMG 980, JCM 13361, ICMP 3945

straininfo link

  • @ref: 109440
  • straininfo: 6106

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20495025Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.Ramos PL, Van Trappen S, Thompson FL, Rocha RCS, Barbosa HR, De Vos P, Moreira-Filho CAInt J Syst Evol Microbiol10.1099/ijs.0.019372-02010Brazil, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, *Nitrogen Fixation, Nucleic Acid Hybridization, Organic Agriculture, Phylogeny, RNA, Ribosomal, 16S/genetics, Saccharum/*microbiology, Sequence Analysis, DNA, Stenotrophomonas/*classification/genetics/*isolation & purification/physiologyGenetics
Biotechnology28745293Biosynthesis of silver nanoparticles by Pseudomonas spp. isolated from effluent of an electroplating industry.Punjabi K, Yedurkar S, Doshi S, Deshapnde S, Vaidya SIET Nanobiotechnol10.1049/iet-nbt.2016.01722017DNA, Ribosomal/genetics, Electrochemical Techniques/*methods, *Industrial Waste, Metal Nanoparticles/*chemistry, Microscopy, Electron, Scanning, Pseudomonas/genetics/*metabolism, RNA, Ribosomal, 16S/genetics, Silver/*chemistry, Soil Microbiology, Water Microbiology, X-Ray DiffractionMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
62337Curators of the CCUGhttps://www.ccug.se/strain?id=60518Culture Collection University of Gothenburg (CCUG) (CCUG 60518)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
109440Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID6106.1