Strain identifier
version 8.1 (current version)
General
@ref: 62208
BacDive-ID: 156021
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Flavobacterium collinsii CCUG 60109 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Trout liver.
NCBI tax id
- NCBI tax id: 1114861
- Matching level: species
doi: 10.13145/bacdive156021.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium collinsii
- full scientific name: Flavobacterium collinsii Zamora et al. 2016
@ref: 62208
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium collinsii
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.996
Culture and growth conditions
culture temp
- @ref: 62208
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62208
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.993 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 62208
- sample type: Trout liver
- sampling date: 2008-07-24
- geographic location: Madrid
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Fishes | |
| #Host | #Fishes | #Salmonidae |
| #Host Body-Site | #Organ | #Liver |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Flavobacterium collinsii CECT7796 | GCA_902804485 | scaffold | ncbi | 1114861 |
| 66792 | Flavobacterium collinsii CECT 7796 | 2906818658 | draft | img | 1114861 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 94.876 | no |
| gram-positive | no | 98.165 | no |
| anaerobic | no | 99.792 | yes |
| aerobic | yes | 87.239 | no |
| halophile | no | 97.342 | no |
| spore-forming | no | 92.236 | no |
| thermophile | no | 99.684 | yes |
| glucose-util | yes | 88.075 | no |
| motile | no | 88.746 | no |
| glucose-ferment | no | 89.692 | no |
External links
@ref: 62208
culture collection no.: CCUG 60109, CECT 7796
straininfo link
- @ref: 109351
- straininfo: 411755
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62208 | Curators of the CCUG | https://www.ccug.se/strain?id=60109 | Culture Collection University of Gothenburg (CCUG) (CCUG 60109) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 109351 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID411755.1 |