Strain identifier

BacDive ID: 15602

Type strain: Yes

Species: Streptomyces sioyaensis

Strain Designation: H-690

Strain history: KCC S-0418 <-- IFO 12820 <-- SAJ <-- ISP 5032 <-- H. Nishimura H-690.

NCBI tax ID(s): 67364 (species)

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General

@ref: 9231

BacDive-ID: 15602

DSM-Number: 40032

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces sioyaensis H-690 is a spore-forming, mesophilic bacterium that produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 67364
  • Matching level: species

strain history

@refhistory
9231<- E.B. Shirling, ISP <- H. Nishimura, H-690
67770KCC S-0418 <-- IFO 12820 <-- SAJ <-- ISP 5032 <-- H. Nishimura H-690.

doi: 10.13145/bacdive15602.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces sioyaensis
  • full scientific name: Streptomyces sioyaensis Nishimura et al. 1961 (Approved Lists 1980)

@ref: 9231

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces sioyaensis

full scientific name: Streptomyces sioyaensis Nishimura et al. 1961

strain designation: H-690

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.688
69480100positive

multimedia

  • @ref: 9231
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40032.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9231GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9231STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9231positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes99.999

compound production

@refcompound
9231siomycine
20216Siomycin
67770Siomycin

Safety information

risk assessment

  • @ref: 9231
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces sioyaensis gene for 16S rRNA, partial sequenceAB122743565ena67364
20218Streptomyces sioyaensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4418D44131121ena67364
20218Streptomyces sioyaensis gene for 16S rRNA, partial sequence, strain: NBRC 12820AB1841711465ena67364
20218Streptomyces sioyaensis strain NRRL B-5408 16S ribosomal RNA gene, partial sequenceDQ0266541489ena67364

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces sioyaensis strain DSM 4003267364.4wgspatric67364
66792Streptomyces sioyaensis ATCC 139892563366712draftimg67364
67770Streptomyces sioyaensis DSM 40032GCA_004122735contigncbi67364

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes89.436no
anaerobicno99.152no
halophileno90.755no
spore-formingyes95.679no
glucose-utilyes91.912no
thermophileno96.324yes
flagellatedno98.452no
motileno93.543no
aerobicyes90.518no
glucose-fermentno92.659no

External links

@ref: 9231

culture collection no.: DSM 40032, ATCC 13989, ATCC 19810, CBS 563.68, IFO 12820, ISP 5032, JCM 4418, NBRC 12820, RIA 1090, BCRC 11878, CBS 4.1306, KCTC 9043, NBIMCC 492, NRRL B-5408, VKM Ac-1260

straininfo link

  • @ref: 84689
  • straininfo: 45549

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny30605073Streptomyces inhibens sp. nov., a novel actinomycete isolated from rhizosphere soil of wheat (Triticum aestivum L.).Jin L, Zhao Y, Song W, Duan L, Jiang S, Wang X, Zhao J, Xiang WInt J Syst Evol Microbiol10.1099/ijsem.0.0032042019Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Triticum/*microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Pathogenicity30941917Bioactivities and genome insights of a thermotolerant antibiotics-producing Streptomyces sp. TM32 reveal its potentials for novel drug discovery.Nakaew N, Lumyong S, Sloan WT, Sungthong RMicrobiologyopen10.1002/mbo3.8422019Alternaria/drug effects, Anti-Bacterial Agents/*metabolism, Bacillus subtilis/drug effects, Biological Products/*metabolism, Biosynthetic Pathways/*genetics, Curcuma/growth & development, Escherichia coli/drug effects, *Genome, Bacterial, Humans, Microbial Sensitivity Tests, Molecular Sequence Annotation, Nucleic Acid Hybridization, Phylogeny, Rhizosphere, Sequence Homology, *Soil Microbiology, Staphylococcus/drug effects, Streptomyces/classification/genetics/*isolation & purification/*metabolismPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9231Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40032)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40032
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84689Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45549.1StrainInfo: A central database for resolving microbial strain identifiers