Strain identifier
BacDive ID: 1560
Type strain: 
Species: Aeribacillus pallidus
Strain Designation: H12
Strain history: <- R. Hensel
NCBI tax ID(s): 33936 (species)
version 8.1 (current version)
General
@ref: 1451
BacDive-ID: 1560
DSM-Number: 3670
keywords: 16S sequence, Bacteria, thermophilic
description: Aeribacillus pallidus H12 is a thermophilic bacterium that was isolated from waste water.
NCBI tax id
- NCBI tax id: 33936
- Matching level: species
strain history
- @ref: 1451
- history: <- R. Hensel
doi: 10.13145/bacdive1560.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Aeribacillus
- species: Aeribacillus pallidus
- full scientific name: Aeribacillus pallidus (Scholz et al. 1988) Miñana-Galbis et al. 2010
synonyms
@ref synonym 20215 Geobacillus pallidus 20215 Bacillus pallidus
@ref: 1451
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Aeribacillus
species: Aeribacillus pallidus
full scientific name: Aeribacillus pallidus (Scholz et al. 1988) Miñana-Galbis et al. 2010
strain designation: H12
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1451
- name: OTTOW MEDIUM (DSMZ Medium 467)
- growth: yes
- link: https://mediadive.dsmz.de/medium/467
- composition: Name: OTTOW MEDIUM (DSMZ Medium 467) Composition: Peptone 7.5 g/l NaCl 5.0 g/l Meat extract 5.0 g/l Casamino acids 2.5 g/l Yeast extract 2.5 g/l Glucose 1.0 g/l Tap water
culture temp
- @ref: 1451
- growth: positive
- type: growth
- temperature: 60
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 1451
- sample type: waste water
- geographic location: Vilsbiburg
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Wastewater
taxonmaps
- @ref: 69479
- File name: preview.99_6456.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_3055;97_3753;98_4764;99_6456&stattab=map
- Last taxonomy: Aeribacillus
- 16S sequence: Z26930
- Sequence Identity:
- Total samples: 9786
- soil counts: 1959
- aquatic counts: 1682
- animal counts: 5491
- plant counts: 654
Safety information
risk assessment
- @ref: 1451
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Geobacillus pallidus strain DSM 3670 16S-23S ribosomal RNA intergenic spacer and tRNA-Ile gene, partial sequence; tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence | EU157948 | 336 | ena | 33936 |
| 1451 | B.pallidus gene for 16S ribosomal RNA | Z26930 | 1516 | ena | 33936 |
GC content
- @ref: 1451
- GC-content: 39.9
External links
@ref: 1451
culture collection no.: DSM 3670, ATCC 51176, LMG 19006
straininfo link
- @ref: 71205
- straininfo: 1159
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15879257 | Bacillus alveayuensis sp. nov., a thermophilic bacterium isolated from deep-sea sediments of the Ayu Trough. | Bae SS, Lee JH, Kim SJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.63424-0 | 2005 | Bacillus/*classification/cytology/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Gentian Violet, Geologic Sediments/*microbiology, Growth Inhibitors/pharmacology, Hot Temperature, Molecular Sequence Data, Movement, Pacific Ocean, Phenazines, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/pharmacology, Spores, Bacterial/cytology, Water Microbiology | Enzymology |
| Stress | 16247670 | Mercury tolerance of thermophilic Bacillus sp. and Ureibacillus sp. | Glendinning KJ, Macaskie LE, Brown NL | Biotechnol Lett | 10.1007/s10529-005-2723-8 | 2005 | Bacillus/*growth & development, Drug Resistance, Bacterial/*physiology, Hot Temperature, Hydrogen Sulfide/metabolism, Mercuric Chloride/*metabolism | Metabolism |
| Phylogeny | 19700455 | Reclassification of Geobacillus pallidus (Scholz et al. 1988) Banat et al. 2004 as Aeribacillus pallidus gen. nov., comb. nov. | Minana-Galbis D, Pinzon DL, Loren JG, Manresa A, Oliart-Ros RM | Int J Syst Evol Microbiol | 10.1099/ijs.0.003699-0 | 2009 | Bacillaceae/*classification/genetics, Base Composition, Base Sequence, Fatty Acids/analysis, Geobacillus/chemistry/*classification/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Genetics |
| Phylogeny | 21954359 | Characterization of thermophilic halotolerant Aeribacillus pallidus TD1 from Tao Dam Hot Spring, Thailand. | Yasawong M, Areekit S, Pakpitchareon A, Santiwatanakul S, Chansiri K | Int J Mol Sci | 10.3390/ijms12085294 | 2011 | Bacillaceae/classification/*isolation & purification/*physiology/ultrastructure, Base Composition, Fatty Acids/metabolism, Hot Springs/*microbiology, RNA, Ribosomal, 16S/genetics, Thailand | Enzymology |
| Phylogeny | 28984237 | Aeribacillus composti sp. nov., a thermophilic bacillus isolated from olive mill pomace compost. | Finore I, Gioiello A, Leone L, Orlando P, Romano I, Nicolaus B, Poli A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002391 | 2017 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, *Composting, DNA, Bacterial/genetics, Fatty Acids/chemistry, Italy, Nucleic Acid Hybridization, Olea/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Enzymology | 33240796 | Purification and characterization of a noble thermostable algal starch liquefying alpha-amylase from Aeribacillus pallidus BTPS-2 isolated from geothermal spring of Nepal. | Timilsina PM, Pandey GR, Shrestha A, Ojha M, Karki TB | Biotechnol Rep (Amst) | 10.1016/j.btre.2020.e00551 | 2020 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1451 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3670) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3670 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 71205 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1159.1 | StrainInfo: A central database for resolving microbial strain identifiers |