Strain identifier

BacDive ID: 15598

Type strain: Yes

Species: Streptomyces sclerotialus

Strain Designation: 147, 44

Strain history: KCC S-0828 <-- IFO 13356 <-- SAJ <-- ISP 5269 <-- M. J. Thirumalachar.

NCBI tax ID(s): 1957 (species)

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General

@ref: 10702

BacDive-ID: 15598

DSM-Number: 43032

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces sclerotialus 147 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1957
  • Matching level: species

strain history

@refhistory
10702<- KCC (Chainia antibiotica) <- H. Lechevalier, IMRU <- M.J. Thirumalachar, 44 (147)
67770KCC S-0828 <-- IFO 13356 <-- SAJ <-- ISP 5269 <-- M. J. Thirumalachar.

doi: 10.13145/bacdive15598.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces sclerotialus
  • full scientific name: Streptomyces sclerotialus Pridham 1970 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Chainia antibiotica

@ref: 10702

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces sclerotialus

full scientific name: Streptomyces sclerotialus Pridham 1970 emend. Nouioui et al. 2018

strain designation: 147, 44

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10702GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10702CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://mediadive.dsmz.de/medium/83Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10702positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10702soil
67770SoilPoonaIndiaINDAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_5370.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_1597;99_5370&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: FJ406122
  • Sequence Identity:
  • Total samples: 40
  • soil counts: 34
  • aquatic counts: 1
  • animal counts: 5

Safety information

risk assessment

  • @ref: 10702
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces sclerotialus 16S rRNA gene, type strain DSM 43032TAJ6216081498ena1957
20218Streptomyces sclerotialus strain DSM 43032 16S ribosomal RNA gene, partial sequenceFJ4061221359ena1957
20218Streptomyces sclerotialus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3039D43973121ena1957
20218Streptomyces sclerotialus strain KCTC 9065 16S ribosomal RNA gene, partial sequenceAY9998261421ena1957
20218Streptomyces sclerotialus gene for 16S rRNA, partial sequence, strain: NBRC 12246AB1840711476ena1957
20218Streptomyces sclerotialus gene for 16S rRNA, partial sequence, strain: NBRC 13904AB2499051437ena1957

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
67770Streptomyces sclerotialus NRRL ISP-5269GCA_000720555contigncbi1957
67770Streptomyces sclerotialus NRRL B-2317GCA_000719105contigncbi1957

GC content

  • @ref: 67770
  • GC-content: 71.9
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.27no
flagellatedno97.451no
gram-positiveyes88.442no
anaerobicno99.025no
aerobicyes91.517no
halophileno90.667no
spore-formingyes95.324no
thermophileno94.908no
glucose-utilyes91.302no
glucose-fermentno90.194no

External links

@ref: 10702

culture collection no.: DSM 43032, ATCC 15721, CBS 167.62, CBS 657.72, DSM 40269, IFO 12246, IFO 13356, IFO 13904, IMRU 3750, ISP 5269, JCM 3039, JCM 4828, KCC A-0039, KCC S-0828, NBRC 13904, RIA 1317, NBRC 12246, NBRC 13356, BCRC 13307, BCRC 15111, CGMCC 4.1484, IFM 1141, KCTC 9065, NRRL B-2317, NRRL ISP-5269, VKM Ac-1909

straininfo link

  • @ref: 84685
  • straininfo: 36452

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24814337Streptomyces chumphonensis sp. nov., isolated from marine sediments.Phongsopitanun W, Thawai C, Suwanborirux K, Kudo T, Ohkuma M, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijs.0.062992-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny30302648Streptomyces monticola sp. nov., a novel actinomycete isolated from soil.Li D, Han L, Zhao J, Ju H, Jiang S, Guo X, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-018-1177-72018China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/*isolation & purification, Vitamin K 2/analysisTranscriptome
Phylogeny34421874Streptomyces tardus sp. nov.: A Slow-Growing Actinobacterium Producing Candicidin, Isolated From Sediments of the Trondheim Fjord.Kralova S, Sandoval-Powers M, Fawwal DV, Degnes KF, Lewin AS, Klinkenberg G, Nguyen GS, Liles MR, Wentzel AFront Microbiol10.3389/fmicb.2021.7142332021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10702Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43032)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43032
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84685Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36452.1StrainInfo: A central database for resolving microbial strain identifiers