Strain identifier

BacDive ID: 15571

Type strain: Yes

Species: Streptomyces diastaticus

Strain history: KCC S-0082 <-- H. Yonehara (IAM 0085) <-- IMRU 3350.

NCBI tax ID(s): 53451 (species)

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General

@ref: 9290

BacDive-ID: 15571

DSM-Number: 40077

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces diastaticus DSM 40077 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 53451
  • Matching level: species

strain history

@refhistory
9290<- E.B. Shirling, ISP <- S.A. Waksman, IMRU
67770KCC S-0082 <-- H. Yonehara (IAM 0085) <-- IMRU 3350.

doi: 10.13145/bacdive15571.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces diastaticus
  • full scientific name: Streptomyces diastaticus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces diastaticus
    20215Actinomyces rutgersensis
    20215Actinomyces gougeroti
    20215Streptomyces gougerotii
    20215Streptomyces rutgersensis

@ref: 9290

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces rutgersensis subsp. rutgersensis

full scientific name: Streptomyces rutgersensis subsp. rutgersensis (Waksman and Curtis 1916) Cercós 1954

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9290GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9290ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9290positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
20216Antibiotic agent
20216Antifungal agent

Isolation, sampling and environmental information

isolation

  • @ref: 9290
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9290
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218S.rutgersensis (DSM 40077T) 16S rRNA geneZ766881476ena53451
20218Streptomyces rutgersensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4608D44262120ena53451
20218Streptomyces rutgersensis gene for 16S rRNA, partial sequence, strain: NBRC 12819AB1841701478ena53451
20218Streptomyces rutgersensis gene for 16S rRNA, partial sequence, strain: NBRC 3419AB1847721475ena53451
20218Streptomyces rutgersensis gene for 16S rRNA, partial sequence, strain: NBRC 3727AB1847951473ena53451

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces rutgersensis strain NBRC 1281953451.3wgspatric53451
67770Streptomyces rutgersensis NBRC 12819GCA_011170105contigncbi53451

GC content

@refGC-contentmethod
6777073fluorimetric
6777073.5genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes92.668no
anaerobicno99.443no
halophileno90.427no
spore-formingyes94.754no
glucose-utilyes89.819no
thermophileno97.962yes
aerobicyes94.482no
motileno95.426no
glucose-fermentno87.885no
flagellatedno97.756no

External links

@ref: 9290

culture collection no.: DSM 40077, AS 4.1853, ATCC 19809, ATCC 3350, CBS 138.20, CBS 562.68, ETH 17541, ETH 28343, IFO 12819, IMRU 3350, ISP 5077, JCM 4082, JCM 4608, KCC S-0082, KCC S-0608, NBRC 12819, NRRL B-1256, RIA 1089, BCRC 13670, BCRC 13701, CCM 3196, CGMCC 4.1853, HAMBI 1038, HUT 6069, IFM 1033, IFO 3419, IFO 3727, IMET 43501, LMG 8568, MTCC 6921, NBRC 3419, NBRC 3727, NRRL B-2102, RIA 410, VKM Ac-1877

straininfo link

  • @ref: 84658
  • straininfo: 389306

literature

  • topic: Phylogeny
  • Pubmed-ID: 24002610
  • title: Streptomyces polyrhachii sp. nov., a novel actinomycete isolated from an edible Chinese black ant (Polyrhachis vicina Roger).
  • authors: Yu C, Liu C, Wang X, Zhao J, Yang L, Gao R, Zhang Y, Xiang W
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-013-0021-3
  • year: 2013
  • mesh: Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hymenoptera/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification/metabolism
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9290Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40077)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40077
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84658Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389306.1StrainInfo: A central database for resolving microbial strain identifiers