Strain identifier

BacDive ID: 15565

Type strain: Yes

Species: Streptomyces roseolus

Strain history: KCC S-0411 <-- IFO 12816 <-- SAJ <-- ISP 5174 <-- INA 5449/54.

NCBI tax ID(s): 67358 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9367

BacDive-ID: 15565

DSM-Number: 40174

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces roseolus DSM 40174 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 67358
  • Matching level: species

strain history

@refhistory
9367<- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA
67770KCC S-0411 <-- IFO 12816 <-- SAJ <-- ISP 5174 <-- INA 5449/54.

doi: 10.13145/bacdive15565.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces roseolus
  • full scientific name: Streptomyces roseolus (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Actinomyces roseolus

@ref: 9367

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces roseolus

full scientific name: Streptomyces roseolus (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.326
69480100positive

Culture and growth conditions

culture medium

  • @ref: 9367
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9367positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

  • @ref: 9367
  • sample type: soil
  • country: USSR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9367
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces roseolus strain AS 4.1872 16S ribosomal RNA gene, partial sequenceAY9998991416ena67358
20218Streptomyces roseolus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4411D44126120ena67358
20218Streptomyces roseolus gene for 16S rRNA, partial sequence, strain: NBRC 12816AB1841681446ena67358
20218Streptomyces sp. NTRHn18 gene for 16S ribosomal RNA, partial sequenceAB9206041323ena1571740

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces roseolus JCM 4411GCA_014649855scaffoldncbi67358
66792Streptomyces roseolus strain JCM 441167358.3wgspatric67358

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.681no
gram-positiveyes87.541no
anaerobicno99.121no
aerobicyes93.275no
halophileno93.848no
spore-formingyes95.117no
glucose-utilyes89.015no
thermophileno99.204yes
motileno94.157no
glucose-fermentno86.688no

External links

@ref: 9367

culture collection no.: DSM 40174, AS 4.1872, ATCC 23210, CBS 559.68, ETH 24181, IFO 12816, INA 5449/54, ISP 5174, KCC S-0411, NBRC 12816, RIA 1086, JCM 4411, BCRC 13778, CGMCC 4.1872, CGMCC 4.2005, NCIMB 13022, NRRL B-5424, VKM Ac-848

straininfo link

  • @ref: 84652
  • straininfo: 92895

literature

Pubmed-IDtitleauthorsjournalDOIyeartopicmeshtopic2
22303062Design and optimization of a novel method for extraction of genistein.Pandit NT, Patravale VBIndian J Pharm Sci10.4103/0250-474x.915832011
27209413Streptomyces xinjiangensis sp. nov., an actinomycete isolated from Lop Nur region.Cheng C, Li YQ, Asem MD, Lu CY, Shi XH, Chu X, Zhang WQ, Di An D, Li WJArch Microbiol10.1007/s00203-016-1234-42016PhylogenyActinobacteria/genetics, Bacterial Typing Techniques, Base Composition/genetics, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Peptidoglycan/genetics, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9367Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40174)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40174
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84652Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92895.1StrainInfo: A central database for resolving microbial strain identifiers