Strain identifier
BacDive ID: 15565
Type strain: 
Species: Streptomyces roseolus
Strain history: KCC S-0411 <-- IFO 12816 <-- SAJ <-- ISP 5174 <-- INA 5449/54.
NCBI tax ID(s): 67358 (species)
version 9.1 (current version)
General
@ref: 9367
BacDive-ID: 15565
DSM-Number: 40174
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Streptomyces roseolus DSM 40174 is a spore-forming bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 67358
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9367 | <- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA |
| 67770 | KCC S-0411 <-- IFO 12816 <-- SAJ <-- ISP 5174 <-- INA 5449/54. |
doi: 10.13145/bacdive15565.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces roseolus
- full scientific name: Streptomyces roseolus (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Actinomyces roseolus
@ref: 9367
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces roseolus
full scientific name: Streptomyces roseolus (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958
type strain: yes
Culture and growth conditions
culture medium
- @ref: 9367
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 9367 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 90.826 |
| 69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 9367
- sample type: soil
- country: USSR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9367
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces roseolus strain AS 4.1872 16S ribosomal RNA gene, partial sequence | AY999899 | 1416 | nuccore | 67358 |
| 20218 | Streptomyces roseolus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4411 | D44126 | 120 | nuccore | 67358 |
| 20218 | Streptomyces roseolus gene for 16S rRNA, partial sequence, strain: NBRC 12816 | AB184168 | 1446 | nuccore | 67358 |
| 20218 | Streptomyces sp. NTRHn18 gene for 16S ribosomal RNA, partial sequence | AB920604 | 1323 | nuccore | 1571740 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces roseolus JCM 4411 | GCA_014649855 | scaffold | ncbi | 67358 |
| 66792 | Streptomyces roseolus strain JCM 4411 | 67358.3 | wgs | patric | 67358 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.924 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.814 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 84.336 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.826 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88 | no |
External links
@ref: 9367
culture collection no.: DSM 40174, AS 4.1872, ATCC 23210, CBS 559.68, ETH 24181, IFO 12816, INA 5449/54, ISP 5174, KCC S-0411, NBRC 12816, RIA 1086, JCM 4411, BCRC 13778, CGMCC 4.1872, CGMCC 4.2005, NCIMB 13022, NRRL B-5424, VKM Ac-848
straininfo link
- @ref: 84652
- straininfo: 92895
literature
| Pubmed-ID | title | authors | journal | DOI | year | topic | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| 22303062 | Design and optimization of a novel method for extraction of genistein. | Pandit NT, Patravale VB | Indian J Pharm Sci | 10.4103/0250-474x.91583 | 2011 | |||
| 27209413 | Streptomyces xinjiangensis sp. nov., an actinomycete isolated from Lop Nur region. | Cheng C, Li YQ, Asem MD, Lu CY, Shi XH, Chu X, Zhang WQ, Di An D, Li WJ | Arch Microbiol | 10.1007/s00203-016-1234-4 | 2016 | Phylogeny | Actinobacteria/genetics, Bacterial Typing Techniques, Base Composition/genetics, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Peptidoglycan/genetics, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9367 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40174) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40174 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84652 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92895.1 | StrainInfo: A central database for resolving microbial strain identifiers |