Strain identifier
BacDive ID: 155616
Type strain: 
Species: Shewanella algae
Strain history: KCTC 22806 <-- K.-K. Kim et al.; Natl. Fish. Res. & Dev. Inst., South Korea; 20-23R.
NCBI tax ID(s): 38313 (species)
version 8.1 (current version)
General
@ref: 61679
BacDive-ID: 155616
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Shewanella algae CCUG 58400 is an aerobe, mesophilic bacterium that was isolated from Bensasi goatfish,Upeneus bensasi,Intestine.
NCBI tax id
- NCBI tax id: 38313
- Matching level: species
strain history
- @ref: 67770
- history: KCTC 22806 <-- K.-K. Kim et al.; Natl. Fish. Res. & Dev. Inst., South Korea; 20-23R.
doi: 10.13145/bacdive155616.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella algae
- full scientific name: Shewanella algae corrig. Simidu et al. 1990
synonyms
@ref synonym 20215 Shewanella haliotis 20215 Shewanella alga 20215 Shewanella upenei
@ref: 61679
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella upenei
type strain: yes
Morphology
colony morphology
- @ref: 61679
- incubation period: 3 days
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 61679 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 61679
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | geographic location | country | origin.country | continent | host species |
|---|---|---|---|---|---|---|---|
| 61679 | Bensasi goatfish,Upeneus bensasi,Intestine | 2008 | South sea | Republic of Korea | KOR | Asia | |
| 67770 | Intestine of bensasi goatfish, Upeneus bensasi | Upeneus bensasi |
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
taxonmaps
- @ref: 69479
- File name: preview.99_1099.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_641;97_744;98_863;99_1099&stattab=map
- Last taxonomy: Shewanella algae
- 16S sequence: GQ260190
- Sequence Identity:
- Total samples: 4840
- soil counts: 118
- aquatic counts: 730
- animal counts: 3902
- plant counts: 90
Sequence information
16S sequences
- @ref: 67770
- description: Shewanella upenei strain 20-23R 16S ribosomal RNA gene, partial sequence
- accession: GQ260190
- length: 1468
- database: ena
- NCBI tax ID: 38313
Genome sequences
- @ref: 67770
- description: Shewanella algae 20-23R
- accession: GCA_002836995
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 38313
GC content
- @ref: 67770
- GC-content: 53.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 92.531 | no |
| gram-positive | no | 99.011 | no |
| anaerobic | no | 93.907 | yes |
| halophile | no | 63.786 | no |
| spore-forming | no | 95.654 | no |
| glucose-util | yes | 91.219 | no |
| aerobic | yes | 55.243 | yes |
| thermophile | no | 99.424 | yes |
| motile | yes | 94.271 | no |
| glucose-ferment | no | 61.535 | no |
External links
@ref: 61679
culture collection no.: CCUG 58400, KCTC 22806, JCM 32077
straininfo link
- @ref: 109022
- straininfo: 411870
literature
- topic: Phylogeny
- Pubmed-ID: 21717322
- title: Shewanella upenei sp. nov., a lipolytic bacterium isolated from bensasi goatfish Upeneus bensasi.
- authors: Kim KK, Kim YO, Park S, Kang SJ, Nam BH, Kim DN, Oh TK, Yoon JH
- journal: J Microbiol
- DOI: 10.1007/s12275-011-0175-5
- year: 2011
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Genes, rRNA, Lipolysis, Molecular Sequence Data, Perciformes/*microbiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Shewanella/*classification/genetics/*isolation & purification/physiology, Species Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 61679 | Curators of the CCUG | https://www.ccug.se/strain?id=58400 | Culture Collection University of Gothenburg (CCUG) (CCUG 58400) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 109022 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID411870.1 |