Strain identifier

BacDive ID: 15553

Type strain: Yes

Species: Streptomyces rochei

Strain Designation: X-15

Strain history: KCC S-0074 <-- Y. Okami <-- ATCC 10739 <-- J. Berger X-15.

NCBI tax ID(s): 1928 (species)

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General

@ref: 9392

BacDive-ID: 15553

DSM-Number: 40231

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces rochei X-15 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1928
  • Matching level: species

strain history

@refhistory
9392<- E.B. Shirling, ISP <- J. Berger, Hoffman-La Roche, Inc., X-15
67770KCC S-0074 <-- Y. Okami <-- ATCC 10739 <-- J. Berger X-15.

doi: 10.13145/bacdive15553.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces rochei
  • full scientific name: Streptomyces rochei Berger et al. 1953 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces plicatus
    20215Streptomyces enissocaesilis
    20215Streptomyces geysiriensis
    20215Streptomyces vinaceusdrappus

@ref: 9392

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces rochei

full scientific name: Streptomyces rochei Berger et al. 1953

strain designation: X-15

type strain: yes

Morphology

multimedia

  • @ref: 9392
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40231.jpg
  • caption: Medium 65 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9392ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
9392GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18564positiveoptimum30mesophilic
9392positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

tolerance

  • @ref: 18564
  • compound: Lysozyme
  • percentage: 0.1

compound production

  • @ref: 9392
  • compound: borrelidin

halophily

  • @ref: 18564
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1856417234glucose+
1856422599arabinose-
1856417992sucrose-
1856418222xylose-
1856417268myo-inositol+
1856429864mannitol+
1856428757fructose+
1856426546rhamnose+
1856416634raffinose-
1856462968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6777078661borrelidinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

  • @ref: 68368
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDGEL
18564+++++-++-+

Isolation, sampling and environmental information

isolation

@refsample typecountrycontinent
9392soilUSSRAsia
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3171.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_3171&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184237
  • Sequence Identity:
  • Total samples: 28
  • soil counts: 12
  • animal counts: 16

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
93921Risk group (German classification)
185641German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus agalactiae DNA for 16S rRNA, strain ATCC 23956AB0024801312ena1311
20218Streptomyces rochei partial 16S rRNA gene, strain DSM 40231TAJ291995869ena1928
20218Streptomyces rochei gene for 16S ribosomal RNA, partial sequence, strain: JCM 4668D44296121ena1928
20218Streptomyces rochei gene for 16S ribosomal RNA, partial sequence, isolate: R1-2A/D104AB9228401458ena1928
20218Streptomyces rochei strain NRRL B-1559 16S ribosomal RNA gene, partial sequenceEF6265981487ena1928
9392Streptomyces rochei gene for 16S rRNA, partial sequence, strain: NBRC 12908AB1842371472ena1928

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces rochei NBRC 129082563366664draftimg1928
66792Streptomyces eurythermus ATCC 23956651717036draftimg42237
66792Streptomyces eurythermus ATCC 23956651717037draftimg42237
67770Streptomyces rochei NRRL B-2410GCA_002155895scaffoldncbi1928

GC content

  • @ref: 67770
  • GC-content: 72.5
  • method: genome sequence analysis

External links

@ref: 9392

culture collection no.: DSM 40231, ATCC 10739, ATCC 19245, ATCC 23956, CBS 224.46, CBS 939.68, CUB 519, ETH 13471, ETH 20727, IFO 12908, IMET 41386, IMRU 3602, ISP 5231, JCM 4074, JCM 4668, KCC S-0074, KCC S-0668, NBRC 12908, NRRL 3533, NRRL B-1559, NRRL B-2410, PSA 83, RIA 1171, BCRC 13716, CCUG 11115, CECT 3329, CGMCC 4.1425, HAMBI 2114, ICMP 490, ICMP 918, IFM 1188, KACC 20022, KCTC 19060, LMG 19313, VKM Ac-997, VTT E-991423

straininfo link

  • @ref: 84639
  • straininfo: 35281

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23579766Endophytic actinomycetes from spontaneous plants of Algerian Sahara: indole-3-acetic acid production and tomato plants growth promoting activity.Goudjal Y, Toumatia O, Sabaou N, Barakate M, Mathieu F, Zitouni AWorld J Microbiol Biotechnol10.1007/s11274-013-1344-y2013Actinobacteria/classification/genetics/*isolation & purification/metabolism, Africa, Northern, Algeria, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Endophytes/*isolation & purification/metabolism, Indoleacetic Acids/*metabolism, Lycopersicon esculentum/*growth & development/microbiology, Molecular Sequence Data, *Nerve Growth Factors, Phylogeny, Plants/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAMetabolism
Genetics31853031Novel macrolactam compound produced by the heterologous expression of a large cryptic biosynthetic gene cluster of Streptomyces rochei IFO12908.Hashimoto T, Kozone I, Hashimoto J, Ueoka R, Kagaya N, Fujie M, Sato N, Ikeda H, Shin-Ya KJ Antibiot (Tokyo)10.1038/s41429-019-0265-x2019Gene Expression Regulation, Bacterial/*physiology, Genome, Bacterial, Lactams/chemistry/*metabolism, Molecular Structure, Multigene Family, Streptomyces/genetics/*metabolismMetabolism
Pathogenicity32361340Purification and characterization of salvianolic acid B from Streptomyces sp. M4 possessing antifungal activity against fungal phytopathogens.Sharma M, Manhas RKMicrobiol Res10.1016/j.micres.2020.1264782020Alternaria/drug effects, Antifungal Agents/chemistry/metabolism/pharmacology, *Benzofurans/chemistry/metabolism/pharmacology, Biological Control Agents, Botrytis/drug effects, Cladosporium/drug effects, Colletotrichum/drug effects, Fungi/*drug effects, Fusarium/drug effects, Genes, Bacterial, Phylogeny, Plant Diseases/microbiology, RNA, Ribosomal, 16S, *Streptomyces/classification/genetics/isolation & purification/metabolismPhylogeny
Phylogeny35597859Streptomyces spinosus sp. nov. and Streptomyces shenzhenensis subsp. oryzicola subsp. nov. endophytic actinobacteria isolated from Jasmine rice and their genome mining for potential as antibiotic producers and plant growth promoters.Kaewkla O, Sukpanoa S, Suriyachadkun C, Chamroensaksi N, Chumroenphat T, Franco CMMAntonie Van Leeuwenhoek10.1007/s10482-022-01741-92022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9392Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40231)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40231
18564Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40231.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84639Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35281.1StrainInfo: A central database for resolving microbial strain identifiers