Strain identifier
BacDive ID: 1554
Type strain: 
Species: Tumebacillus ginsengisoli
Strain history: <- ST Lee, KAIST
NCBI tax ID(s): 363888 (species)
version 9.2 (current version)
General
@ref: 7369
BacDive-ID: 1554
DSM-Number: 18389
keywords: 16S sequence, Bacteria, aerobe, mesophilic, rod-shaped
description: Tumebacillus ginsengisoli DSM 18389 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from soil of a ginseng field.
NCBI tax id
- NCBI tax id: 363888
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7369 | <- S. T. Lee <- W.-T. Im, KAIST; Gsoil 1105 |
| 67771 | <- ST Lee, KAIST |
doi: 10.13145/bacdive1554.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Alicyclobacillaceae
- genus: Tumebacillus
- species: Tumebacillus ginsengisoli
- full scientific name: Tumebacillus ginsengisoli Baek et al. 2011
@ref: 7369
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Alicyclobacillaceae
genus: Tumebacillus
species: Tumebacillus ginsengisoli
full scientific name: Tumebacillus ginsengisoli Baek et al. 2011
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain |
|---|---|---|---|
| 67771 | rod-shaped | no | |
| 67771 | positive |
Culture and growth conditions
culture medium
- @ref: 7369
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 7369 | positive | growth | 30 |
| 67771 | positive | growth | 30 |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67771
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7369 | soil of a ginseng field | Pocheon Province | Republic of Korea | KOR | Asia |
| 67771 | From soil of the ginseng field | Pocheon Province | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_11413.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1221;96_5722;97_6890;98_8537;99_11413&stattab=map
- Last taxonomy: Tumebacillus ginsengisoli subclade
- 16S sequence: AB245375
- Sequence Identity:
- Total samples: 3382
- soil counts: 2614
- aquatic counts: 287
- animal counts: 177
- plant counts: 304
Safety information
risk assessment
- @ref: 7369
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7369
- description: Tumebacillus ginsengisoli gene for 16S rRNA, partial sequence
- accession: AB245375
- length: 1498
- database: nuccore
- NCBI tax ID: 363888
GC content
- @ref: 7369
- GC-content: 55.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 7369
culture collection no.: DSM 18389, KCTC 13942, Gsoil 1105
straininfo link
- @ref: 71199
- straininfo: 398221
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20802062 | Tumebacillus ginsengisoli sp. nov., isolated from soil of a ginseng field. | Baek SH, Cui Y, Kim SC, Cui CH, Yin C, Lee ST, Im WT | Int J Syst Evol Microbiol | 10.1099/ijs.0.023358-0 | 2010 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Gram-Positive Endospore-Forming Rods/*classification/genetics/isolation & purification, Molecular Sequence Data, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 23435245 | Tumebacillus flagellatus sp. nov., an alpha-amylase/pullulanase-producing bacterium isolated from cassava wastewater. | Wang Q, Xie N, Qin Y, Shen N, Zhu J, Mi H, Huang R | Int J Syst Evol Microbiol | 10.1099/ijs.0.045351-0 | 2013 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Glycoside Hydrolases/*biosynthesis, Gram-Positive Rods/*classification/genetics/isolation & purification, Manihot, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Waste Water/*microbiology, alpha-Amylases/*biosynthesis | Genetics |
| Phylogeny | 25858243 | Tumebacillus algifaecis sp. nov., isolated from decomposing algal scum. | Wu YF, Zhang B, Xing P, Wu QL, Liu SJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.000240 | 2015 | Alicyclobacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, *Eutrophication, Fatty Acids/chemistry, Lakes, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26303322 | Tumebacillus luteolus sp. nov., isolated from soil. | Her J, Srinivasan S, Lee SS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000549 | 2015 | Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ukraine | Genetics |
| Phylogeny | 26956705 | Tumebacillus lipolyticus sp. nov., isolated from river water. | Prasad RV, Bhumika V, Anil Kumar P, Srinivas NRT | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000576 | 2015 | Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7369 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18389) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18389 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 71199 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398221.1 | StrainInfo: A central database for resolving microbial strain identifiers |