Strain identifier
BacDive ID: 155175
Type strain: 
Species: Ensifer adhaerens
Strain history: IAM 14251 <-- NCIMB 12342 <-- ATCC 33212 <-- L. E. Casida strain A.
NCBI tax ID(s): 106592 (species)
version 8.1 (current version)
General
@ref: 61083
BacDive-ID: 155175
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Ensifer adhaerens CCUG 56773 is an aerobe, mesophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 106592
- Matching level: species
strain history
- @ref: 67770
- history: IAM 14251 <-- NCIMB 12342 <-- ATCC 33212 <-- L. E. Casida strain A.
doi: 10.13145/bacdive155175.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Ensifer
- species: Ensifer adhaerens
- full scientific name: Ensifer adhaerens Casida 1982
synonyms
- @ref: 20215
- synonym: Sinorhizobium adhaerens
@ref: 61083
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Ensifer
species: Ensifer adhaerens
type strain: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 61083 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 61083
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 61083 | Soil | Pennsylvania | USA | USA | North America |
| 67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_758.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_84;97_88;98_232;99_758&stattab=map
- Last taxonomy: Ensifer
- 16S sequence: AM181733
- Sequence Identity:
- Total samples: 7038
- soil counts: 2353
- aquatic counts: 1061
- animal counts: 923
- plant counts: 2701
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Ensifer adhaerens gene for 16S rRNA, partial sequence, strain: NBRC 100388 | AB681163 | 1410 | ena | 106592 |
| 67770 | Ensifer adhaerens partial 16S rRNA gene, strain LMG 20216 | AM181733 | 1426 | ena | 106592 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ensifer adhaerens strain Casida A | 106592.23 | plasmid | patric | 106592 |
| 66792 | Ensifer adhaerens strain Casida A | 106592.22 | plasmid | patric | 106592 |
| 67770 | Ensifer adhaerens Casida A | GCA_000697965 | complete | ncbi | 106592 |
External links
@ref: 61083
culture collection no.: CCUG 56773, NCIMB 12342, ATCC 33212, LMG 20216, JCM 21105, NBRC 100388, IAM 14251
straininfo link
- @ref: 108655
- straininfo: 27349
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16584862 | Occurrence of rhizobia in the gut of the higher termite Nasutitermes nigriceps. | Frohlich J, Koustiane C, Kampfer P, Rossello-Mora R, Valens M, Berchtold M, Kuhnigk T, Hertel H, Maheshwari DK, Konig H | Syst Appl Microbiol | 10.1016/j.syapm.2006.03.001 | 2006 | Animals, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal, Digestive System/microbiology, Fatty Acids/analysis, Isoptera/*microbiology/physiology, Molecular Sequence Data, Phylogeny, Plants/microbiology, RNA, Ribosomal, 16S, Rhizobiaceae/chemistry/classification/genetics/*isolation & purification/physiology, Sinorhizobium/classification/genetics/*isolation & purification/physiology, Soil Microbiology, Symbiosis | Genetics |
| Phylogeny | 23907221 | Ciceribacter lividus gen. nov., sp. nov., isolated from rhizosphere soil of chick pea (Cicer arietinum L.). | Kathiravan R, Jegan S, Ganga V, Prabavathy VR, Tushar L, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijs.0.049726-0 | 2013 | Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cicer/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Glycolipids/chemistry, India, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Triterpenes/chemistry, Ubiquinone/chemistry | Genetics |
| Phylogeny | 27771162 | Multi locus sequence analysis and symbiotic characterization of novel Ensifer strains nodulating Tephrosia spp. in the Indian Thar Desert. | Tak N, Awasthi E, Bissa G, Meghwal RR, James EK, Sprent JS, Gehlot HS | Syst Appl Microbiol | 10.1016/j.syapm.2016.08.002 | 2016 | Base Sequence, DNA, Bacterial/*genetics, Desert Climate, Genes, Essential/*genetics, Molecular Chaperones/genetics, Multilocus Sequence Typing, Phylogeny, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Rhizobiaceae/*classification/*genetics/isolation & purification, Sequence Analysis, DNA, Soil Microbiology, Symbiosis/physiology, Tephrosia/*microbiology, Transcription Factors/genetics | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 61083 | Curators of the CCUG | https://www.ccug.se/strain?id=56773 | Culture Collection University of Gothenburg (CCUG) (CCUG 56773) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 108655 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID27349.1 |