Strain identifier

BacDive ID: 15511

Type strain: Yes

Species: Streptomyces recifensis

Strain Designation: AX-18

Strain history: KCC S-0408 <-- IFO 12813 <-- SAJ <-- ISP 5115 <-- J. O. Falcão de Morais AX-18 (IAUR 3054).

NCBI tax ID(s): 67355 (species)

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General

@ref: 9325

BacDive-ID: 15511

DSM-Number: 40115

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces recifensis AX-18 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 67355
  • Matching level: species

strain history

@refhistory
9325<- E.B. Shirling, ISP <- J.O. Falcao de Morais, AX-18
67770KCC S-0408 <-- IFO 12813 <-- SAJ <-- ISP 5115 <-- J. O. Falcão de Morais AX-18 (IAUR 3054).

doi: 10.13145/bacdive15511.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces recifensis
  • full scientific name: Streptomyces recifensis (Gonçalves de Lima et al. 1955) Falcão de Morais et al. 1957 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Nocardia recifei

@ref: 9325

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces recifensis

full scientific name: Streptomyces recifensis (Gonçalves de Lima et al. 1955) Falcão de Morais et al. 1957

strain designation: AX-18

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 9325
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9325positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9325antibiotic AX-18
67770Antibiotic AX-18

Isolation, sampling and environmental information

isolation

  • @ref: 9325
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1870.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_1474;99_1870&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184165
  • Sequence Identity:
  • Total samples: 444
  • soil counts: 348
  • aquatic counts: 22
  • animal counts: 67
  • plant counts: 7

Safety information

risk assessment

  • @ref: 9325
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces recifensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4408D44123120ena67355
20218Streptomyces recifensis gene for 16S rRNA, partial sequence, strain: NBRC 12813AB1841651460ena67355

Genome sequences

  • @ref: 67770
  • description: Streptomyces recifensis NRRL B-3811
  • accession: GCA_002154615
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 67355

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.184no
gram-positiveyes90.499no
anaerobicno98.968no
halophileno93.395no
spore-formingyes94.712no
glucose-utilyes88.095no
aerobicyes93.397no
thermophileno97.336yes
motileno93.538no
glucose-fermentno90.046no

External links

@ref: 9325

culture collection no.: DSM 40115, ATCC 19803, CBS 555.68, IFO 12813, ISP 5115, NBRC 12813, RIA 1082, IAUR 3054, JCM 4408, BCRC 12086, CGMCC 4.1921, NRRL B-3811, VKM Ac-1890

straininfo link

  • @ref: 84597
  • straininfo: 37102

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21622836Streptomyces gramineus sp. nov., an antibiotic-producing actinobacterium isolated from bamboo (Sasa borealis) rhizosphere soil.Lee HJ, Han SI, Whang KSInt J Syst Evol Microbiol10.1099/ijs.0.030163-02011Antibiosis, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny31592758Streptomyces bauhiniae sp. nov., isolated from tree bark of Bauhinia variegata Linn. in Thailand.Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Kuncharoen N, Phongsopitanun W, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0037432020Bacterial Typing Techniques, Base Composition, Bauhinia/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Bark/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/*classification/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9325Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40115)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40115
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84597Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37102.1StrainInfo: A central database for resolving microbial strain identifiers