Strain identifier

BacDive ID: 15510

Type strain: No

Species: Streptomyces rangoonensis

Strain history: KCC S-0510 <-- IFO 13078 <-- SAJ <-- ISP 5452 <-- ATCC 6860 <-- NCTC 1678.

NCBI tax ID(s): 67257 (subspecies)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9553

BacDive-ID: 15510

DSM-Number: 40452

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces rangoonensis DSM 40452 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from fatal case of human pulmonary streptothricosis.

NCBI tax id

  • NCBI tax id: 67257
  • Matching level: subspecies

strain history

@refhistory
9553<- E.B. Shirling, ISP <- ATCC <- NCTC
67770KCC S-0510 <-- IFO 13078 <-- SAJ <-- ISP 5452 <-- ATCC 6860 <-- NCTC 1678.

doi: 10.13145/bacdive15510.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces rangoonensis
  • full scientific name: Streptomyces rangoonensis corrig. (Erikson 1935) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces flocculus
    20215Streptomyces rangoon
    20215Streptomyces albus
    20215Actinomyces gibsonii
    20215Streptotrix alba
    20215Streptomyces gibsonii
    20215Actinomyces flocculus
    20215Streptomyces almquistii
    20215Actinomyces rangoon
    20215Actinomyces almquisti

@ref: 9553

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albus subsp. albus

full scientific name: Streptomyces albus subsp. albus (Rossi Doria 1891) Nagatsu et al. 1962

type strain: no

Morphology

colony morphology

@refcolony colorincubation periodmedium used
19458Yellow10-14 daysISP 2
1945810-14 daysISP 3
19458Yellow10-14 daysISP 4
19458Yellow10-14 daysISP 5
1945810-14 daysISP 6
19458Yellow10-14 daysISP 7

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
19458yesAerial MyceliumWhiteISP 2
19458yesAerial MyceliumWhiteISP 3
19458yesAerial MyceliumWhiteISP 4
19458yesAerial MyceliumWhiteISP 5
19458noISP 6
19458yesAerial MyceliumWhiteISP 7

multimedia

  • @ref: 9553
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40452.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9553GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19458ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19458ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19458ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19458ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19458ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19458ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
9553ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9553positivegrowth28mesophilic
19458positiveoptimum28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 19458
  • spore description: Formation of spore chains: spira, spore surface: smooth
  • type of spore: spore
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1945862968cellulose-
1945816634raffinose+
1945826546rhamnose+
1945828757fructose-
1945829864mannitol+
1945817268myo-inositol-
1945818222xylose+
1945817992sucrose-
1945822599arabinose-
1945817234glucose+
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase+4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19458-------+-+-

Isolation, sampling and environmental information

isolation

  • @ref: 9553
  • sample type: fatal case of human pulmonary streptothricosis

isolation source categories

Cat1Cat2
#Infection#Disease
#Host#Human

taxonmaps

  • @ref: 69479
  • File name: preview.99_961.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_751;99_961&stattab=map
  • Last taxonomy: Streptomyces albus subclade
  • 16S sequence: AJ781366
  • Sequence Identity:
  • Total samples: 204
  • soil counts: 170
  • aquatic counts: 8
  • animal counts: 22
  • plant counts: 4

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
95531Risk group (German classification)
194581Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces rangoonensis strain IFO 13078 16S ribosomal RNA gene, partial sequenceAY9998591422ena67354
20218Streptomyces rangoonensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4510D44200121ena67354
9553Streptomyces rangoonensis gene for 16S rRNA, partial sequence, strain: NBRC 13078AB1842951468ena1888
67770Streptomyces rangoonensis 16S rRNA gene, type strain LMG 20295AJ7813661483ena1888

Genome sequences

  • @ref: 67770
  • description: Streptomyces albus NRRL B-12378
  • accession: GCA_001661615
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 1888

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.082no
gram-positiveyes90.858no
anaerobicno99.426no
aerobicyes93.237no
halophileno78.916no
spore-formingyes91.678yes
glucose-utilyes88.203yes
motileno93.956no
thermophileno87.856yes
glucose-fermentno87.766no

External links

@ref: 9553

culture collection no.: DSM 40452, ATCC 25490, ATCC 6860, CBS 918.69, IFO 13078, IMET 41357, ISP 5452, JCM 4510, KCC S-0510, NBRC 13078, NCTC 1678, NRRL B-12378, NRRL B-16595, RIA 1270, BCRC 15164, CGMCC 4.1785, HUT 6616, NBIMCC 3321, VKM Ac-1899

straininfo link

  • @ref: 84596
  • straininfo: 126055

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21571936Streptomyces panacagri sp. nov., isolated from soil of a ginseng field.Cui Y, Baek SH, Wang L, Lee HG, Cui C, Lee ST, Im WTInt J Syst Evol Microbiol10.1099/ijs.0.029942-02011Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny24277863Taxonomic evaluation of Streptomyces albus and related species using multilocus sequence analysis and proposals to emend the description of Streptomyces albus and describe Streptomyces pathocidini sp. nov.Labeda DP, Doroghazi JR, Ju KS, Metcalf WWInt J Syst Evol Microbiol10.1099/ijs.0.058107-02013Algorithms, Bacterial Typing Techniques, DNA, Bacterial/genetics, Databases, Nucleic Acid, Genes, Bacterial, Likelihood Functions, Molecular Sequence Data, *Multilocus Sequence Typing, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/geneticsTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9553Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40452)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40452
19458Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40452.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84596Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID126055.1StrainInfo: A central database for resolving microbial strain identifiers