Strain identifier

BacDive ID: 15509

Type strain: Yes

Species: Streptomyces ramulosus

Strain Designation: Boots FD 1039

Strain history: KCC S-0193 <-- ETH 17653.

NCBI tax ID(s): 47762 (species)

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General

@ref: 9312

BacDive-ID: 15509

DSM-Number: 40100

keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces ramulosus Boots FD 1039 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 47762
  • Matching level: species

strain history

@refhistory
9312<- E.B. Shirling, ISP <- R. Hütter, ETH
67770KCC S-0193 <-- ETH 17653.

doi: 10.13145/bacdive15509.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces ramulosus
  • full scientific name: Streptomyces ramulosus Ettlinger et al. 1958 (Approved Lists 1980)

@ref: 9312

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces ramulosus

full scientific name: Streptomyces ramulosus Ettlinger et al. 1958

strain designation: Boots FD 1039

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9312GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9312STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

@refgrowthtypetemperaturerange
18532positiveoptimum28mesophilic
9312positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9312acetomycin
20216Acetomycin
20216Pepsinostreptin complex

halophily

  • @ref: 18532
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1853217234glucose+
1853222599arabinose-
1853217992sucrose+
1853218222xylose+/-
1853217268myo-inositol+/-
1853229864mannitol+/-
1853228757fructose-
1853226546rhamnose+/-
1853216634raffinose-
1853262968cellulose-
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refmetaboliteproductionChebi-ID
67770acetomycinyes
68368acetoinno15688
68368indoleno35581
68368hydrogen sulfideno16136

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase+4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18532-------+---

Isolation, sampling and environmental information

isolation

@refsample typecountry
9312soil
67770SoilAfrica

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185321German classification
93121Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces ramulosus strain CGMCC 4.1434 16S ribosomal RNA gene, partial sequenceJN5660201361ena47762
20218Streptomyces ramulosus strain DSM 40100 16S ribosomal RNA gene, partial sequenceKC9545581348ena47762
20218Streptomyces ramulosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4604D44260121ena47762
20218Streptomyces ramulosus gene for 16S rRNA, partial sequence, strain: NBRC 12812AB1841641480ena47762
20218Streptomyces ramulosus gene for 16S rRNA, partial sequence, strain: NBRC 15798AB1847011469ena47762
20218Streptomyces ramulosus strain NRRL B-2714 16S ribosomal RNA gene, partial sequenceDQ0266621483ena47762

External links

@ref: 9312

culture collection no.: DSM 40100, ATCC 19802, CBS 554.68, CUB 516, ETH 17653, IFO 12812, IFO 15798, ISP 5100, JCM 4193, JCM 4604, KCC S-0193, KCC S-0604, NBRC 12812, NBRC 15798, NRRL B-2714, RIA 1081, BCRC 12343, CGMCC 4.1434, HAMBI 981, ICMP 143, KCTC 9768, LMG 19354, VKM Ac-1001

straininfo link

  • @ref: 84595
  • straininfo: 307576

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20525811Streptomyces youssoufiensis sp. nov., isolated from a Moroccan phosphate mine.Hamdali H, Virolle MJ, von Jan M, Sproer C, Klenk HP, Ouhdouch YInt J Syst Evol Microbiol10.1099/ijs.0.023036-02010DNA, Bacterial/genetics, Fatty Acids/metabolism, Mining, Molecular Sequence Data, Morocco, Phosphates/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolismMetabolism
Phylogeny29034849Streptomyces amphotericinicus sp. nov., an amphotericin-producing actinomycete isolated from the head of an ant (Camponotus japonicus Mayr).Cao T, Mu S, Lu C, Zhao S, Li D, Yan K, Xiang W, Liu CInt J Syst Evol Microbiol10.1099/ijsem.0.0023822017Amphotericin B/*biosynthesis, Animals, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny35651486Streptomyces benahoarensis sp. nov. Isolated From a Lava Tube of La Palma, Canary Islands, Spain.Gonzalez-Pimentel JL, Hermosin B, Saiz-Jimenez C, Jurado VFront Microbiol10.3389/fmicb.2022.9078162022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9312Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40100)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40100
18532Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40100.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
84595Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID307576.1StrainInfo: A central database for resolving microbial strain identifiers