Strain identifier

BacDive ID: 15507

Type strain: Yes

Species: Streptomyces purpurogeneiscleroticus

Strain Designation: 186

Strain history: KCC A-0080 <-- IPV 1528 <-- HACC 186 (M. J. Thirumalachar C-3).

NCBI tax ID(s): 68259 (species)

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General

@ref: 10824

BacDive-ID: 15507

DSM-Number: 43156

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces purpurogeneiscleroticus 186 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 68259
  • Matching level: species

strain history

@refhistory
10824<- KCC <- V.D. Kuznetsov, RIA <- Hindustan Antibiotics Ltd., HACC 186
67770KCC A-0080 <-- IPV 1528 <-- HACC 186 (M. J. Thirumalachar C-3).

doi: 10.13145/bacdive15507.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces purpurogeneiscleroticus
  • full scientific name: Streptomyces purpurogeneiscleroticus corrig. Pridham 1970 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Chainia purpurogena
    20215Streptomyces purpurogeniscleroticus

@ref: 10824

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces purpurogeneiscleroticus

full scientific name: Streptomyces purpurogeneiscleroticus Pridham 1970

strain designation: 186

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.206
69480100positive

multimedia

  • @ref: 10824
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43156.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10824GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10824ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10824positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10824soil
67770SoilPimpriIndiaINDAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_134.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_119;99_134&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184544
  • Sequence Identity:
  • Total samples: 438
  • soil counts: 379
  • aquatic counts: 28
  • animal counts: 28
  • plant counts: 3

Safety information

risk assessment

  • @ref: 10824
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces purpurogeneiscleroticus strain CGMCC 4.1929 16S ribosomal RNA gene, partial sequenceHQ2444581381ena68259
20218Streptomyces purpurogeneiscleroticus 16S rRNA gene, type strain DSM 43156TAJ6216041498ena68259
20218Streptomyces purpurogeneiscleroticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4818D44385121ena68259
20218Streptomyces purpurogeneiscleroticus gene for 16S rRNA, partial sequence, strain: NBRC 13001AB1842501474ena68259
20218Streptomyces purpurogeneiscleroticus gene for 16S rRNA, partial sequence, strain: NBRC 13903AB1845441480ena68259

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces purpurogeneiscleroticus DSM 43156GCA_020024005scaffoldncbi68259
66792Streptomyces purpurogeneiscleroticus strain DSM 4315668259.6wgspatric68259
67770Streptomyces purpurogeneiscleroticus NRRL B-2952GCA_001280155contigncbi68259

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.544no
gram-positiveyes89.419no
anaerobicno98.789no
aerobicyes92.611no
halophileno86.606no
spore-formingyes94.864no
motileno90.357no
thermophileno96.037yes
glucose-utilyes90.064no
glucose-fermentno89.631no

External links

@ref: 10824

culture collection no.: DSM 43156, ATCC 19348, CBS 409.66, CBS 659.72, DSM 40271, IFO 13001, IFO 13358, IFO 13903, ISP 5271, JCM 3080, JCM 3103, JCM 4818, KCC A-0103, KCC S-0818, NBRC 13001, NBRC 13358, NBRC 13903, NCIB 10981, NRRL B-2952, RIA 1319, RIA 886, BCRC 13317, BCRC 15113, CGMCC 4.1929, CMI 112722, HAMBI 1061, NCIMB 10981, PCM 2306

straininfo link

  • @ref: 84593
  • straininfo: 319091

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10824Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43156)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43156
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84593Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID319091.1StrainInfo: A central database for resolving microbial strain identifiers