Strain identifier

BacDive ID: 155053

Type strain: No

Species: Campylobacter avium

NCBI tax ID(s): 522485 (species)

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General

@ref: 60906

BacDive-ID: 155053

keywords: Bacteria

description: Campylobacter avium CCUG 56294 is a bacterium that was isolated from Chicken caecal contents.

NCBI tax id

  • NCBI tax id: 522485
  • Matching level: species

doi: 10.13145/bacdive155053.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter avium
  • full scientific name: Campylobacter avium Rossi et al. 2009

@ref: 60906

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter avium

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838027897tryptophan-energy source
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838016634raffinose-fermentation
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016199urea-hydrolysis
6837317272propionate-assimilation
6837330089acetate-assimilation
6837317634D-glucose-assimilation
68373606565hippurate+hydrolysis
6837317632nitrate-reduction
6837316199urea-hydrolysis
6837316947citrate-assimilation
6837325115malate-assimilation
6837330031succinate-assimilation
6837378019triphenyltetrazolium chloride-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

@refChebi-IDmetaboliteproduction
6838035581indoleno
6837316136hydrogen sulfideno

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380glycin arylamidase-
68380histidine arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380alkaline phosphatase-3.1.3.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380leucine arylamidase-3.4.11.1
68380L-arginine arylamidase-
68380tryptophan deaminase-4.1.99.1
68380alpha-arabinosidase-3.2.1.55
68380beta-Galactosidase 6-phosphate-
68380urease-3.5.1.5
68373catalase-1.11.1.6
68373alkaline phosphatase-3.1.3.1
68373L-aspartate arylamidase+3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373esterase+
68373urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    60906C14:05.914
    60906C16:042.816
    60906C18:03.518
    60906C14:0 3OH/C16:1 ISO I3.915.485
    60906C16:1 ω7c0.515.819
    60906C18:1 ω7c /12t/9t40.717.824
    60906C18:1 ω9c117.769
    60906C18:2 ω6,9c/C18:0 ANTE1.817.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
60906--+-----------------

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
60906--++----+------------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
60906-----------------------------

Isolation, sampling and environmental information

isolation

  • @ref: 60906
  • sample type: Chicken caecal contents
  • sampling date: 2006-10-01
  • geographic location: Bologna
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Birds#Chicken
#Host Body-Site#Gastrointestinal tract

External links

@ref: 60906

culture collection no.: CCUG 56294

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
60906Curators of the CCUGhttps://www.ccug.se/strain?id=56294Culture Collection University of Gothenburg (CCUG) (CCUG 56294)
68373Automatically annotated from API CAM
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym