Strain identifier
BacDive ID: 154937
Type strain: 
Species: Campylobacter lari subsp. concheus
NCBI tax ID(s): 1031536 (strain), 488545 (subspecies)
version 8.1 (current version)
General
@ref: 60731
BacDive-ID: 154937
keywords: genome sequence, Bacteria, microaerophile, mesophilic, motile
description: Campylobacter lari subsp. concheus CCUG 55789 is a microaerophile, mesophilic, motile bacterium that was isolated from Human infection.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1031536 | strain |
| 488545 | subspecies |
doi: 10.13145/bacdive154937.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter lari subsp. concheus
- full scientific name: Campylobacter lari subsp. concheus Debruyne et al. 2009
@ref: 60731
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter lari subsp. concheus
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.767 | |
| 69480 | 99.988 | negative |
colony morphology
- @ref: 60731
- incubation period: 2 days
Culture and growth conditions
culture temp
- @ref: 60731
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 60731
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.999 |
| 69481 | no | 98 |
Isolation, sampling and environmental information
isolation
- @ref: 60731
- sample type: Human infection
- sampling date: 1990
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Human |
| #Infection | #Disease |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Campylobacter lari subsp. concheus LMG 11760 | GCA_000816225 | complete | ncbi | 1031536 |
| 66792 | Campylobacter lari subsp. concheus LMG 11760 | 1031536.3 | complete | patric | 1031536 |
| 66792 | Campylobacter lari concheus LMG 11760 | 2636415659 | complete | img | 1031536 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 98 | no |
| motile | yes | 86.583 | no |
| flagellated | yes | 60.544 | no |
| gram-positive | no | 99.019 | no |
| anaerobic | no | 86.509 | yes |
| aerobic | no | 97.612 | yes |
| halophile | no | 79.783 | no |
| spore-forming | no | 96.798 | no |
| glucose-util | no | 84.966 | no |
| thermophile | no | 76.68 | yes |
| glucose-ferment | no | 85.929 | no |
External links
@ref: 60731
culture collection no.: CCUG 55789, LMG 11760
straininfo link
- @ref: 108463
- straininfo: 9851
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 60731 | Curators of the CCUG | https://www.ccug.se/strain?id=55789 | Culture Collection University of Gothenburg (CCUG) (CCUG 55789) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 108463 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID9851.1 |