Strain identifier
BacDive ID: 15490
Type strain:
Species: Streptomyces pseudogriseolus
Strain Designation: H-16C
Strain history: KCC S-0071 <-- Y. Okami H-16C (NIHJ 224).
NCBI tax ID(s): 36817 (species)
General
@ref: 9225
BacDive-ID: 15490
DSM-Number: 40026
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Streptomyces pseudogriseolus H-16C is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 36817
- Matching level: species
strain history
@ref | history |
---|---|
9225 | <- E.B. Shirling, ISP <- Y. Okami, H-16C |
67770 | KCC S-0071 <-- Y. Okami H-16C (NIHJ 224). |
doi: 10.13145/bacdive15490.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces pseudogriseolus
- full scientific name: Streptomyces pseudogriseolus Okami and Umezawa 1955 (Approved Lists 1980)
@ref: 9225
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces pseudogriseolus
full scientific name: Streptomyces pseudogriseolus Okami and Umezawa 1955
strain designation: H-16C
type strain: yes
Morphology
multimedia
- @ref: 9225
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40026.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 9225
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9225 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
@ref | compound |
---|---|
9225 | xanthomycin |
67770 | Xanthomycins A and B (H-1159) |
metabolite production
- @ref: 67770
- Chebi-ID: 135854
- metabolite: guamecycline
- production: yes
Isolation, sampling and environmental information
isolation
- @ref: 9225
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_6264.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_1662;99_6264&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: DQ442541
- Sequence Identity:
- Total samples: 166
- soil counts: 112
- aquatic counts: 2
- animal counts: 49
- plant counts: 3
Safety information
risk assessment
- @ref: 9225
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces pseudogriseolus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4071 | D43999 | 121 | ena | 36817 |
20218 | Streptomyces pseudogriseolus gene for 16S rRNA, partial sequence, strain: NBRC 12902 | AB184232 | 1477 | ena | 36817 |
20218 | Streptomyces pseudogriseolus strain NRRL B-3288T 16S ribosomal RNA gene, partial sequence | DQ442541 | 1492 | ena | 36817 |
Genome sequences
- @ref: 67770
- description: Streptomyces pseudogriseolus NRRL B-3288
- accession: GCA_002154585
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 36817
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 97.231 | no |
gram-positive | yes | 87.839 | no |
anaerobic | no | 99.021 | no |
halophile | no | 91.529 | no |
spore-forming | yes | 96.814 | no |
glucose-util | yes | 88.158 | no |
aerobic | yes | 92.059 | no |
thermophile | no | 98.207 | yes |
motile | no | 93.298 | no |
glucose-ferment | no | 90.612 | no |
External links
@ref: 9225
culture collection no.: DSM 40026, ATCC 12770, ATCC 23949, CBS 933.68, IFO 12902, ISP 5026, JCM 4071, JCM 4663, NBRC 12902, NCIB 9411, RIA 1106, BCRC 12132, CGMCC 4.1800, NCIMB 9411, NCIMB 9814, NRRL B-3288, VKM Ac-1859, VTT E-011968
straininfo link
- @ref: 84577
- straininfo: 389460
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9225 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40026) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40026 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
84577 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389460.1 | StrainInfo: A central database for resolving microbial strain identifiers |