Strain identifier

BacDive ID: 15490

Type strain: Yes

Species: Streptomyces pseudogriseolus

Strain Designation: H-16C

Strain history: KCC S-0071 <-- Y. Okami H-16C (NIHJ 224).

NCBI tax ID(s): 36817 (species)

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General

@ref: 9225

BacDive-ID: 15490

DSM-Number: 40026

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces pseudogriseolus H-16C is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 36817
  • Matching level: species

strain history

@refhistory
9225<- E.B. Shirling, ISP <- Y. Okami, H-16C
67770KCC S-0071 <-- Y. Okami H-16C (NIHJ 224).

doi: 10.13145/bacdive15490.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces pseudogriseolus
  • full scientific name: Streptomyces pseudogriseolus Okami and Umezawa 1955 (Approved Lists 1980)

@ref: 9225

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces pseudogriseolus

full scientific name: Streptomyces pseudogriseolus Okami and Umezawa 1955

strain designation: H-16C

type strain: yes

Morphology

multimedia

  • @ref: 9225
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40026.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 9225
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9225positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9225xanthomycin
67770Xanthomycins A and B (H-1159)

metabolite production

  • @ref: 67770
  • Chebi-ID: 135854
  • metabolite: guamecycline
  • production: yes

Isolation, sampling and environmental information

isolation

  • @ref: 9225
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_6264.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_1662;99_6264&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: DQ442541
  • Sequence Identity:
  • Total samples: 166
  • soil counts: 112
  • aquatic counts: 2
  • animal counts: 49
  • plant counts: 3

Safety information

risk assessment

  • @ref: 9225
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces pseudogriseolus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4071D43999121ena36817
20218Streptomyces pseudogriseolus gene for 16S rRNA, partial sequence, strain: NBRC 12902AB1842321477ena36817
20218Streptomyces pseudogriseolus strain NRRL B-3288T 16S ribosomal RNA gene, partial sequenceDQ4425411492ena36817

Genome sequences

  • @ref: 67770
  • description: Streptomyces pseudogriseolus NRRL B-3288
  • accession: GCA_002154585
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 36817

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.231no
gram-positiveyes87.839no
anaerobicno99.021no
halophileno91.529no
spore-formingyes96.814no
glucose-utilyes88.158no
aerobicyes92.059no
thermophileno98.207yes
motileno93.298no
glucose-fermentno90.612no

External links

@ref: 9225

culture collection no.: DSM 40026, ATCC 12770, ATCC 23949, CBS 933.68, IFO 12902, ISP 5026, JCM 4071, JCM 4663, NBRC 12902, NCIB 9411, RIA 1106, BCRC 12132, CGMCC 4.1800, NCIMB 9411, NCIMB 9814, NRRL B-3288, VKM Ac-1859, VTT E-011968

straininfo link

  • @ref: 84577
  • straininfo: 389460

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9225Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40026)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40026
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84577Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389460.1StrainInfo: A central database for resolving microbial strain identifiers