Strain identifier

BacDive ID: 15483

Type strain: Yes

Species: Streptomyces prasinus

Strain history: KCC S-0192 <-- ETH 13815.

NCBI tax ID(s): 67345 (species)

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General

@ref: 9311

BacDive-ID: 15483

DSM-Number: 40099

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces prasinus DSM 40099 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 67345
  • Matching level: species

strain history

@refhistory
9311<- E.B. Shirling, ISP <- R. Hütter, ETH
67770KCC S-0192 <-- ETH 13815.

doi: 10.13145/bacdive15483.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces prasinus
  • full scientific name: Streptomyces prasinus Ettlinger et al. 1958 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces bambergiensis

@ref: 9311

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces prasinus

full scientific name: Streptomyces prasinus Ettlinger et al. 1958 emend. Labeda et al. 2016

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9311GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9311ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
18531positiveoptimum28mesophilic
9311positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

halophily

  • @ref: 18531
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1853117234glucose+
1853122599arabinose-
1853117992sucrose+
1853118222xylose-
1853117268myo-inositol-
1853129864mannitol+
1853128757fructose+
1853126546rhamnose+
1853116634raffinose-
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18531+----------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9311soilMallorcaSpainESPEurope
67770SoilMallorcaSpainESPEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3792.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_1938;98_2384;99_3792&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: DQ026658
  • Sequence Identity:
  • Total samples: 449
  • soil counts: 341
  • aquatic counts: 41
  • animal counts: 50
  • plant counts: 17

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185311German classification
93111Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces prasinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4603D44259120ena67345
20218Streptomyces prasinus gene for 16S rRNA, partial sequence, strain: NBRC 12810AB1848461474ena67345
9311Streptomyces prasinus strain NRRL B-2712 16S ribosomal RNA gene, partial sequenceDQ0266581498ena67345

Genome sequences

  • @ref: 67770
  • description: Streptomyces prasinus NRRL B-2712
  • accession: GCA_001419705
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 67345

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.203no
gram-positiveyes90.048no
anaerobicno98.899no
aerobicyes91.812no
halophileno90.607no
spore-formingyes94.12no
thermophileno95.143no
glucose-utilyes89.504yes
motileno92.638no
glucose-fermentno86.155no

External links

@ref: 9311

culture collection no.: DSM 40099, ATCC 19800, CBS 552.68, ETH 13815, IFO 12810, ISP 5099, KCC S-0192, KCC S-0603, NBRC 12810, NRRL B-2712, RIA 1079, JCM 4192, BCRC 13681, CGMCC 4.1920, ICMP 144, JCM 4603, NBIMCC 1484, VKM Ac-1725

straininfo link

  • @ref: 84570
  • straininfo: 265465

literature

  • topic: Phylogeny
  • Pubmed-ID: 17625208
  • title: Streptomyces emeiensis sp. nov., a novel streptomycete from soil in China.
  • authors: Sun W, Huang Y, Zhang YQ, Liu ZH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64934-0
  • year: 2007
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Streptomyces/chemistry/*classification/genetics/*isolation & purification
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9311Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40099)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40099
18531Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40099.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84570Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265465.1StrainInfo: A central database for resolving microbial strain identifiers