Strain identifier

BacDive ID: 15474

Type strain: Yes

Species: Streptomyces platensis

Strain history: KCC S-0189 <-- M. Hamada <-- Y. Okami (NIHJ 407) <-- PSA 150.

NCBI tax ID(s): 58346 (species)

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General

@ref: 9120

BacDive-ID: 15474

DSM-Number: 40041

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces platensis DSM 40041 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 58346
  • Matching level: species

strain history

@refhistory
9120<- E.B. Shirling, ISP <- R.C. Pittinger, M5-5353
67770KCC S-0189 <-- M. Hamada <-- Y. Okami (NIHJ 407) <-- PSA 150.

doi: 10.13145/bacdive15474.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces platensis
  • full scientific name: Streptomyces platensis Tresner and Backus 1956 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces libani subsp. rufus
    20215Streptomyces hygroscopicus subsp. glebosus
    20215Streptomyces glebosus

@ref: 9120

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces platensis

full scientific name: Streptomyces platensis Tresner and Backus 1956 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.373
69480100positive

multimedia

@refmultimedia contentintellectual property rightscaption
9120https://www.dsmz.de/microorganisms/photos/DSM_40041-1.JPG© Leibniz-Institut DSMZ
9120https://www.dsmz.de/microorganisms/photos/DSM_40041.jpg© Leibniz-Institut DSMZMedium 65 28°C

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9120GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9120ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9120positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9120oxytetracycline
9120terramycine

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-9(H6), MK-9(H4)

metabolite production

  • @ref: 67770
  • Chebi-ID: 27701
  • metabolite: oxytetracycline
  • production: yes

Isolation, sampling and environmental information

isolation

  • @ref: 9120
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9120
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces platensis strain CGMCC 4.1975 16S ribosomal RNA gene, partial sequenceHQ2444611373ena58346
20218Streptomyces platensis strain DSM 40041 16S ribosomal RNA gene, partial sequenceGU383117782ena58346
20218Streptomyces platensis gene for 16S rRNA, partial sequenceAB122745565ena58346
20218Streptomyces platensis gene for 16S rRNAAB0458821488ena58346
20218Streptomyces platensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4662D44292121ena58346
20218Streptomyces platensis gene for 16S rRNA, partial sequence, strain: NBRC 12901AB1842311475ena58346

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces platensis ATCC 23948GCA_008704855completencbi58346
66792Streptomyces platensis strain ATCC 2394858346.16completepatric58346
66792Streptomyces platensis strain DSM 4004158346.12wgspatric58346
66792Streptomyces platensis DSM 400412862650393draftimg58346
67770Streptomyces platensis DSM 40041GCA_002119195contigncbi58346

GC content

  • @ref: 67770
  • GC-content: 71.2
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno93.359no
flagellatedno98.239no
gram-positiveyes89.239no
anaerobicno99.07no
aerobicyes93.367no
halophileno87.183no
spore-formingyes96.057no
thermophileno98.38yes
glucose-utilyes90.624no
glucose-fermentno91.759no

External links

@ref: 9120

culture collection no.: DSM 40041, ATCC 13865, ATCC 23948, CBS 310.56, CBS 932.68, DSM 41241, ETH 20739, IFO 12901, IFO 14007, ISP 5041, JCM 4189, JCM 4662, KCC S-0189, KCC S-0662, NBRC 12901, NBRC 14007, NRRL 2364, RIA 1110, BCRC 11898, CCUG 11118, CGMCC 4.1975, KCTC 1088, MTCC 3026, NCAIM B.01481, NCIMB 9607, NRRL B-5486, VKM Ac-1288

straininfo link

  • @ref: 84562
  • straininfo: 45546

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism44446N-demethylation of lergotrile by Streptomyces platensis.Davis PJ, Glade JC, Clark AM, Smith RVAppl Environ Microbiol10.1128/aem.38.5.891-893.19791979Biotransformation, Chemical Phenomena, Chemistry, Ergolines/analogs & derivatives/biosynthesis/*metabolism, Fermentation, Fungi/metabolism, Species Specificity, Streptomyces/*metabolismPhylogeny
Enzymology17887988Production of L-leucine aminopeptidase by selected Streptomyces isolates.Nagy V, Nampoothiri KM, Pandey A, Rahulan R, Szakacs GJ Appl Microbiol10.1111/j.1365-2672.2007.03546.x2007Aminopeptidases/analysis/antagonists & inhibitors/biosynthesis, Bacteriological Techniques, Copper/pharmacology, Edetic Acid/pharmacology, Electrophoresis, Polyacrylamide Gel, Enzyme Stability, Fermentation, Hydrogen-Ion Concentration, Hydrolysis, Hydroxamic Acids/pharmacology, *Industrial Microbiology, Leucyl Aminopeptidase/analysis/*biosynthesis, Metalloproteases/antagonists & inhibitors, Methionyl Aminopeptidases, Streptomyces/isolation & purification/*metabolism, Substrate Specificity, Temperature, Zinc/pharmacologyBiotechnology
Metabolism18673432Production of transglutaminase by Streptomyces isolates in solid-state fermentation.Nagy V, Szakacs GLett Appl Microbiol10.1111/j.1472-765X.2008.02395.x2008Bacterial Proteins/*biosynthesis/chemistry/metabolism, Culture Media, Electrophoresis, Polyacrylamide Gel, Enzyme Stability, Fabaceae/metabolism, *Fermentation, Lens Plant/metabolism, Molecular Weight, Peas/metabolism, Streptomyces/*metabolism, Temperature, Transglutaminases/*biosynthesis/chemistry/metabolismEnzymology
Genetics28705965Draft Genome Sequences of Three Actinobacteria Strains Presenting New Candidate Organisms with High Potentials for Specific P450 Cytochromes.Grumaz C, Vainshtein Y, Kirstahler P, Luetz S, Kittelmann M, Schroer K, Eggimann FK, Czaja R, Vogel A, Hilberath T, Worsch A, Girhard M, Urlacher VB, Sandberg M, Sohn KGenome Announc10.1128/genomeA.00532-172017
Metabolism29943426A novel cytochrome P450 mono-oxygenase from Streptomyces platensis resembles activities of human drug metabolizing P450s.Worsch A, Eggimann FK, Girhard M, von Buhler CJ, Tieves F, Czaja R, Vogel A, Grumaz C, Sohn K, Lutz S, Kittelmann M, Urlacher VBBiotechnol Bioeng10.1002/bit.267812018Amodiaquine/metabolism, Antimalarials/metabolism, Antiviral Agents/metabolism, Biotransformation, Cloning, Molecular, Cytochrome P-450 Enzyme System/genetics/*metabolism, Escherichia coli/genetics/metabolism, Gene Expression, Humans, Inactivation, Metabolic, Mixed Function Oxygenases/genetics/*metabolism, Ritonavir/metabolism, Sequence Analysis, DNA, Streptomyces/*enzymology/genetics, Xenobiotics/*metabolismPathogenicity
34865204Evaluation of P450 monooxygenase activity in lyophilized recombinant E. coli cells compared to resting cells.Hilberath T, Raffaele A, Windeln LM, Urlacher VBAMB Express10.1186/s13568-021-01319-02021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9120Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40041)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40041
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84562Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45546.1StrainInfo: A central database for resolving microbial strain identifiers