Strain identifier

BacDive ID: 15473

Type strain: No

Species: Streptomyces platensis

Strain history: KCC S-0953 <-- NRRL 8035 <-- Upjohn Co., USA.

NCBI tax ID(s): 58346 (species)

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General

@ref: 405

BacDive-ID: 15473

DSM-Number: 929

keywords: genome sequence, Bacteria, mesophilic

description: Streptomyces platensis DSM 929 is a mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

NCBI tax id

  • NCBI tax id: 58346
  • Matching level: species

strain history

@refhistory
405<- NRRL <- Upjohn Comp., UC 5330 (Streptomyces platensis var. clarensis)
67770KCC S-0953 <-- NRRL 8035 <-- Upjohn Co., USA.

doi: 10.13145/bacdive15473.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces platensis
  • full scientific name: Streptomyces platensis Tresner and Backus 1956 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces libani subsp. rufus
    20215Streptomyces hygroscopicus subsp. glebosus
    20215Streptomyces glebosus

@ref: 405

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces platensis

full scientific name: Streptomyces platensis Tresner and Backus 1956 emend. Nouioui et al. 2018

type strain: no

Morphology

colony morphology

@refcolony colormedium used
69214Daffodil yellow (1007), ochre brown (8001)suter with tyrosine
69214Ivory (1014)ISP 3
69214Ivory (1014)ISP 5
69214Ivory (1014), khaki grey (7008)ISP 7
69214Sand yellow (1002)ISP 2
69214Sand yellow (1002)ISP 4
69214Sand yellow (1002)ISP 6
69214Sand yellow (1002)suter without tyrosine

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69214yesAerial myceliumSilk grey (7044), platinium grey (7036), traffic white (9016)ISP 7
69214noAerial myceliumISP 6
69214yesAerial myceliumSignal white (9003), signal black (9004), black brown (8022)ISP 3
69214yesAerial myceliumSignal white (9003), slate grey (7015)ISP 2
69214yesAerial myceliumTraffic white (9016), black brown (8022)ISP 5
69214yesAerial myceliumTraffic white (9016)ISP 4
69214yesAerial myceliumTraffic white (9016)suter without tyrosine
69214yesAerial myceliumTraffic white (9016)suter with tyrosine

pigmentation

@refproductionnamecolor
69214yesMelanin
69214yessoluble pigmentSand yellow (1002), green beige (1000), ocher brown (8001)

multimedia

@refmultimedia contentcaptionintellectual property rights
405https://www.dsmz.de/microorganisms/photos/DSM_929.jpgMedium 65 28°CLeibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
69214DSM_929_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69214DSM_929_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69214DSM_929_image6.jpeg(ISP6, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69214DSM_929_image9.jpeg(SSM+T, SSM-T)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 405
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
405positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

  • @ref: 405
  • compound: antibiotic U-44,590

halophily

  • @ref: 69214
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6921422599arabinose-growth
6921462968cellulose-growth
6921428757fructose+growth
6921417234glucose+growth
6921417268inositol+growth
6921437684mannose+growth
6921416634raffinose+growth
6921426546rhamnose-growth
6921417992sucrose+growth
6921418222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

metabolite production

  • @ref: 67770
  • metabolite: 5,6-dihydro-5-azathymidine
  • production: yes

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase lipase (C 8)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin+3.4.21.4
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69214--++-+++--+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69214++/-++/-+++/-++/-++++-+++-+/-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
405soilUSAUSANorth America
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 405
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Streptomyces platensis subsp. clarensis NRRL 8035
  • accession: GCA_026168065
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1649334

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.86no
flagellatedno98.157no
gram-positiveyes87.169no
anaerobicno99.185no
aerobicyes91.111no
halophileno89.111no
spore-formingyes93.186no
glucose-fermentno91.267no
thermophileno98.511yes
glucose-utilyes90.003yes

External links

@ref: 405

culture collection no.: DSM 929, NRRL 8035, UC 5330, JCM 4953, BCRC 12184, NCIMB 11179, KCC S-0297, KCC S-0355

straininfo link

  • @ref: 84561
  • straininfo: 47295

Reference

@idauthorscataloguedoi/urltitle
405Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 929)https://www.dsmz.de/collection/catalogue/details/culture/DSM-929
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69214Wink, J.https://cdn.dsmz.de/wink/DSM%20929.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
84561Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47295.1StrainInfo: A central database for resolving microbial strain identifiers