Strain identifier

BacDive ID: 15471

Type strain: Yes

Species: Streptomyces pilosus

Strain history: KCC S-0403 <-- IFO 12807 <-- SAJ <-- ISP 5097 <-- ETH 11686.

NCBI tax ID(s): 28893 (species)

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General

@ref: 9309

BacDive-ID: 15471

DSM-Number: 40097

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces pilosus DSM 40097 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 28893
  • Matching level: species

strain history

@refhistory
9309<- E.B. Shirling, ISP <- R. Hütter, ETH, 11686
67770KCC S-0403 <-- IFO 12807 <-- SAJ <-- ISP 5097 <-- ETH 11686.

doi: 10.13145/bacdive15471.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces pilosus
  • full scientific name: Streptomyces pilosus Ettlinger et al. 1958 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces flavoviridis

@ref: 9309

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces pilosus

full scientific name: Streptomyces pilosus Ettlinger et al. 1958

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.399
69480100positive

multimedia

  • @ref: 9309
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40097.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9309GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9309ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9309positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9309
  • compound: piloquinone

metabolite production

  • @ref: 67770
  • metabolite: piloquinone
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
9309soilItalyITAEurope
67770SoilItalyITAEuropeRome

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9309
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces pilosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4403D44118121ena28893
20218Streptomyces pilosus gene for 16S rRNA, partial sequence, strain: NBRC 12807AB1841611463ena28893

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces pilosus strain JCM 440328893.3wgspatric28893
67770Streptomyces pilosus JCM 4403GCA_014649835scaffoldncbi28893

GC content

  • @ref: 67770
  • GC-content: 72.5
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes90.607no
anaerobicno99.146no
halophileno84.451no
spore-formingyes96.288no
glucose-utilyes89.779no
motileno92.716no
flagellatedno97.441no
aerobicyes93.635no
thermophileno98.543no
glucose-fermentno89.045no

External links

@ref: 9309

culture collection no.: DSM 40097, ATCC 19797, CBS 549.68, IFO 12807, ISP 5097, KCC S-0403, NBRC 12807, RIA 1076, ETH 11686, JCM 4403, BCRC 12091, ICMP 145, KCTC 19058, NRRL 2721, NRRL ISP-5097, VKM Ac-1765

straininfo link

@refstraininfo
8455845636
84559289675

literature

  • topic: Biotechnology
  • Pubmed-ID: 26405387
  • title: Improvement of Desferrioxamine B Production of Streptomyces pilosus ATCC 19797 With Use of Protease Inhibitor and Minerals Related to Its Activity.
  • authors: Mortazavi M, Akbarzadeh A
  • journal: Indian J Clin Biochem
  • DOI: 10.1007/s12291-012-0197-8
  • year: 2012

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9309Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40097)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40097
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84558Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45636.1StrainInfo: A central database for resolving microbial strain identifiers
84559Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID289675.1StrainInfo: A central database for resolving microbial strain identifiers