Strain identifier
BacDive ID: 154665
Type strain: 
Species: Prevotella oulorum
Strain history: CCUG 54769 <-- NCTC 12747 <-- ATCC 43324 <-- Scott. Anaerobe Ref. Lab. <-- H. N. Shah <-- W. P. Holbrook WPH 179.
NCBI tax ID(s): 28136 (species)
version 9.3 (current version)
General
@ref: 60321
BacDive-ID: 154665
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Prevotella oulorum CCUG 54769 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Human subgingival plaque/gingival crevice.
NCBI tax id
- NCBI tax id: 28136
- Matching level: species
strain history
- @ref: 67770
- history: CCUG 54769 <-- NCTC 12747 <-- ATCC 43324 <-- Scott. Anaerobe Ref. Lab. <-- H. N. Shah <-- W. P. Holbrook WPH 179.
doi: 10.13145/bacdive154665.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Prevotellaceae
- genus: Prevotella
- species: Prevotella oulorum
- full scientific name: Prevotella oulorum corrig. (Shah et al. 1985) Shah and Collins 1990
synonyms
@ref synonym 20215 Segatella oulorum 20215 Prevotella oulora 20215 Bacteroides oulorum
@ref: 60321
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Prevotellaceae
genus: Prevotella
species: Prevotella oulorum
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 97.678 |
| 125439 | negative | 99.5 |
colony morphology
- @ref: 60321
- incubation period: 2 days
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 60321 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 60321 | anaerobe | |
| 125438 | anaerobe | 91.995 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 91.953 |
| 125439 | no | 99.8 |
observation
- @ref: 67770
- observation: quinones: MK-10, MK-11
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 60321 | Human subgingival plaque/gingival crevice |
| 67770 | Gingival crevices |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Human |
| #Host Body-Site | #Oral cavity and airways |
| #Infection | #Patient |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Prevotella oulorum gene for 16S ribosomal RNA, partial sequence, strain: JCM 14966 | AB547702 | 1491 | nuccore | 28136 |
| 67770 | Prevotella oulora 16S ribosomal RNA gene, partial sequence | L16472 | 1513 | nuccore | 28136 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Prevotella oulorum JCM 14966 | 1236497.4 | wgs | patric | 1236497 |
| 66792 | Prevotella oulorum strain ATCC 43324 | 28136.6 | wgs | patric | 28136 |
| 66792 | Prevotella oulorum JCM 14966 | 2585427905 | draft | img | 1236497 |
| 66792 | Prevotella oulorum ATCC 43324 | 2585428083 | draft | img | 28136 |
| 67770 | Prevotella oulorum JCM 14966 | GCA_000613785 | contig | ncbi | 1236497 |
| 67770 | Prevotella oulorum ATCC 43324 | GCA_900167385 | scaffold | ncbi | 28136 |
GC content
- @ref: 67770
- GC-content: 45.1
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 74.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 79.6 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.8 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.678 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 91.995 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.953 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.88 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.484 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89 | no |
External links
@ref: 60321
culture collection no.: CCUG 54769, JCM 14966, ATCC 43324, NCTC 12747, CCUG 20177, CIP 104477, JCM 13451, NCTC 11871
straininfo link
- @ref: 108247
- straininfo: 319360
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 60321 | Curators of the CCUG | https://www.ccug.se/strain?id=54769 | Culture Collection University of Gothenburg (CCUG) (CCUG 54769) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 108247 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID319360.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |