Strain identifier

BacDive ID: 154612

Type strain: No

Species: Burkholderia lata

NCBI tax ID(s): 482957 (species)

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General

@ref: 60246

BacDive-ID: 154612

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Burkholderia lata CCUG 54572 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Water,Maraval river.

NCBI tax id

  • NCBI tax id: 482957
  • Matching level: species

doi: 10.13145/bacdive154612.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Burkholderia
  • species: Burkholderia lata
  • full scientific name: Burkholderia lata Vanlaere et al. 2009

@ref: 60246

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Burkholderia

species: Burkholderia lata

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.978

Culture and growth conditions

culture temp

  • @ref: 60246
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 60246
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69480no99.991
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    60246C14:04.914
    60246C16:019.316
    60246C17:00.717
    60246C18:00.718
    60246C14:0 3OH/C16:1 ISO I6.415.485
    60246C16:0 2OH1.117.233
    60246C16:0 3OH5.317.52
    60246C16:1 2OH1.517.047
    60246C16:1 ω7c19.115.819
    60246C17:0 CYCLO10.716.888
    60246C18:1 2OH2.719.088
    60246C18:1 ω7c /12t/9t23.117.824
    60246C18:1 ω9c0.617.769
    60246C18:2 ω6,9c/C18:0 ANTE1.317.724
    60246C19:0 CYCLO ω8c2.118.9
    60246C8:0 3OH0.69.385
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
60246-+++++----++----+---

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
60246--+--++++++++-+++++++

Isolation, sampling and environmental information

isolation

  • @ref: 60246
  • sample type: Water,Maraval river
  • country: Trinidad and Tobago
  • origin.country: TTO
  • continent: Middle and South America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Burkholderia lata LMG 6863GCA_902499055contigncbi482957
66792Burkholderia lata strain LMG 6863482957.56wgspatric482957

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.306no
anaerobicno97.882yes
halophileno92.45no
spore-formingno93.95no
glucose-utilyes92.616yes
aerobicyes88.478yes
thermophileno99.662no
motileyes88.027no
flagellatedno78.169no
glucose-fermentno79.086yes

External links

@ref: 60246

culture collection no.: CCUG 54572, NRRL B-2320, ATCC 17460, LMG 6863

straininfo link

  • @ref: 108220
  • straininfo: 3954

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
60246Curators of the CCUGhttps://www.ccug.se/strain?id=54572Culture Collection University of Gothenburg (CCUG) (CCUG 54572)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
108220Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID3954.1