Strain identifier

BacDive ID: 154507

Type strain: No

Species: Paenibacillus validus

NCBI tax ID(s): 44253 (species)

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General

@ref: 60088

BacDive-ID: 154507

keywords: Bacteria, aerobe, mesophilic

description: Paenibacillus validus CCUG 53941 is an aerobe, mesophilic bacterium that was isolated from Human blood,80-yr-old woman.

NCBI tax id

  • NCBI tax id: 44253
  • Matching level: species

doi: 10.13145/bacdive154507.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus validus
  • full scientific name: Paenibacillus validus (Nakamura 1984 ex Bredemann and Heigener 1935) Ash et al. 1994

  • synonyms

    @refsynonym
    20215Paenibacillus gordonae
    20215Bacillus gordonae
    20215Bacillus validus

@ref: 60088

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus validus

type strain: no

Culture and growth conditions

culture temp

  • @ref: 60088
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 60088
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
6837117754glycerol-builds acid from
6837117113erythritol-builds acid from
6837117108D-arabinose-builds acid from
6837130849L-arabinose+builds acid from
6837116988D-ribose-builds acid from
6837165327D-xylose+builds acid from
6837165328L-xylose-builds acid from
6837115963ribitol-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837112936D-galactose+builds acid from
6837117634D-glucose+builds acid from
6837115824D-fructose+builds acid from
6837116024D-mannose+builds acid from
6837117266L-sorbose-builds acid from
6837162345L-rhamnose-builds acid from
6837116813galactitol-builds acid from
6837117268myo-inositol-builds acid from
6837116899D-mannitol+builds acid from
6837117924D-sorbitol+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
68371320061methyl alpha-D-glucopyranoside+builds acid from
6837159640N-acetylglucosamine-builds acid from
6837127613amygdalin-builds acid from
6837118305arbutin-builds acid from
683714853esculin+builds acid from
6837117814salicin+builds acid from
6837117057cellobiose+builds acid from
6837117306maltose+builds acid from
6837117716lactose+builds acid from
6837128053melibiose+builds acid from
6837117992sucrose+builds acid from
6837127082trehalose+builds acid from
6837115443inulin-builds acid from
683716731melezitose-builds acid from
6837116634raffinose+builds acid from
6837128017starch+builds acid from
6837128087glycogen+builds acid from
6837117151xylitol-builds acid from
6837128066gentiobiose+builds acid from
6837132528turanose+builds acid from
6837162318D-lyxose-builds acid from
6837116443D-tagatose-builds acid from
6837128847D-fucose-builds acid from
6837118287L-fucose-builds acid from
6837118333D-arabitol-builds acid from
6837118403L-arabitol-builds acid from
6837124265gluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371Potassium 5-ketogluconate-builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    60088C14:02.214
    60088C15:03.915
    60088C16:07.316
    60088C18:01.918
    60088C14:0 ISO2.813.618
    60088C15:0 ANTEISO47.414.711
    60088C15:0 ISO11.814.621
    60088C16:0 iso7.115.626
    60088C16:1 ω11c4.315.757
    60088C16:1 ω7c alcohol1.415.386
    60088C17:0 anteiso4.416.722
    60088C17:0 iso2.816.629
    60088C17:1 ω10c ISO0.816.387
    60088C18:1 ω9c1.417.769
    60088C18:2 ω6,9c/C18:0 ANTE0.817.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
60088+-------------------+

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
60088----+-+---++++----++-+---++++++++--+++-++---------

Isolation, sampling and environmental information

isolation

  • @ref: 60088
  • sample type: Human blood,80-yr-old woman
  • sampling date: 2006-12-14
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body Product#Fluids#Blood
#Infection#Patient

External links

@ref: 60088

culture collection no.: CCUG 53941

straininfo link

  • @ref: 108134
  • straininfo: 303588

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
60088Curators of the CCUGhttps://www.ccug.se/strain?id=53941Culture Collection University of Gothenburg (CCUG) (CCUG 53941)
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
108134Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID303588.1