Strain identifier

BacDive ID: 154459

Type strain: No

Species: Stenotrophomonas sp.

NCBI tax ID(s): 69392 (species)

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General

@ref: 59985

BacDive-ID: 154459

keywords: Bacteria, aerobe, mesophilic

description: Stenotrophomonas sp. CCUG 53696 is an aerobe, mesophilic bacterium that was isolated from Human cornea,39-yr-old man,conjunctivitis.

NCBI tax id

  • NCBI tax id: 69392
  • Matching level: species

doi: 10.13145/bacdive154459.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Stenotrophomonas
  • species: Stenotrophomonas sp.
  • full scientific name: Stenotrophomonas Palleroni and Bradbury 1993

@ref: 59985

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Stenotrophomonas

species: Stenotrophomonas sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 59985
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 59985
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    59985C10:00.410
    59985C14:01.814
    59985C15:00.415
    59985C16:02.816
    59985C10:0 3OH0.311.423
    59985C11:0 ANTEISO0.210.693
    59985C11:0 iso510.605
    59985C11:0 ISO 3OH2.212.09
    59985C12:0 3OH2.313.455
    59985C12:0 ISO 3OH0.413.098
    59985C13:0 2OH1.314.191
    59985C13:0 iso0.412.612
    59985C13:0 ISO 3OH2.514.11
    59985C14:0 ISO1.513.618
    59985C14:1 ω5c0.313.899
    59985C15:0 ANTEISO21.314.711
    59985C15:0 ISO32.214.621
    59985C15:1 ISO F1.514.414
    59985C15:1 ω6c0.314.856
    59985C16:0 iso1.915.626
    59985C16:1 ω7c10.915.819
    59985C16:1 ω9c1.515.774
    59985C17:0 iso1.716.629
    59985C17:1 ω8c0.316.792
    59985C17:1 ω9c ISO3.916.416
    59985C18:1 ω7c /12t/9t0.417.824
    59985C18:1 ω9c0.417.769
    59985C18:2 ω6,9c/C18:0 ANTE0.617.724
    59985unknown 11.7981.511.798
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
59985-+++-+--+-++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
59985+----++++-+-++---++--

Isolation, sampling and environmental information

isolation

  • @ref: 59985
  • sample type: Human cornea,39-yr-old man,conjunctivitis
  • sampling date: 2006-10-28
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body-Site#Organ#Eye
#Infection#Disease
#Infection#Patient

External links

@ref: 59985

culture collection no.: CCUG 53696

straininfo link

  • @ref: 108098
  • straininfo: 303453

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
59985Curators of the CCUGhttps://www.ccug.se/strain?id=53696Culture Collection University of Gothenburg (CCUG) (CCUG 53696)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
108098Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID303453.1