Strain identifier

BacDive ID: 154420

Type strain: No

Species: Stenotrophomonas rhizophila

NCBI tax ID(s): 216778 (species)

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General

@ref: 59918

BacDive-ID: 154420

keywords: Bacteria, aerobe, mesophilic

description: Stenotrophomonas rhizophila CCUG 53501 is an aerobe, mesophilic bacterium that was isolated from Environment,industry.

NCBI tax id

  • NCBI tax id: 216778
  • Matching level: species

doi: 10.13145/bacdive154420.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Stenotrophomonas
  • species: Stenotrophomonas rhizophila
  • full scientific name: Stenotrophomonas rhizophila Wolf et al. 2002

@ref: 59918

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Stenotrophomonas

species: Stenotrophomonas rhizophila

type strain: no

Culture and growth conditions

culture temp

  • @ref: 59918
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

oxygen tolerance

  • @ref: 59918
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836917306maltose+assimilation
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68369cytochrome oxidase-1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    59918C10:00.510
    59918C14:02.914
    59918C15:00.615
    59918C16:0516
    59918C10:0 3OH0.311.423
    59918C11:0 iso4.110.605
    59918C11:0 ISO 3OH2.512.09
    59918C12:0 3OH2.513.455
    59918C12:0 ISO 3OH0.513.098
    59918C13:0 2OH0.814.191
    59918C13:0 ANTEISO0.312.701
    59918C13:0 iso0.812.612
    59918C13:0 ISO 3OH2.314.11
    59918C14:0 ISO2.113.618
    59918C14:1 ω5c0.313.899
    59918C15:0 ANTEISO13.214.711
    59918C15:0 ISO33.614.621
    59918C15:1 ISO F414.414
    59918C16:0 iso1.715.626
    59918C16:1 ω5c0.215.908
    59918C16:1 ω7c10.115.819
    59918C16:1 ω9c2.115.774
    59918C17:0 iso1.816.629
    59918C17:1 ω8c0.416.792
    59918C17:1 ω9c ISO5.116.416
    59918C18:1 ω7c /12t/9t0.417.824
    59918C18:1 ω9c0.517.769
    59918C18:2 ω6,9c/C18:0 ANTE0.517.724
    59918unknown 11.7981.311.798
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
59918-+++-++-+-++---++---

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
59918-----++++-+-++---++--

Isolation, sampling and environmental information

isolation

  • @ref: 59918
  • sample type: Environment,industry
  • sampling date: 2006-09-01
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial

External links

@ref: 59918

culture collection no.: CCUG 53501

straininfo link

  • @ref: 108065
  • straininfo: 412140

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
59918Curators of the CCUGhttps://www.ccug.se/strain?id=53501Culture Collection University of Gothenburg (CCUG) (CCUG 53501)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
108065Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID412140.1