Strain identifier

BacDive ID: 15435

Type strain: Yes

Species: Streptomyces olivaceoviridis

Strain history: KCC S-0499 <-- IFO 13066 <-- SAJ <-- ISP 5334 <-- INA 11584.

NCBI tax ID(s): 1921 (species)

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General

@ref: 9466

BacDive-ID: 15435

DSM-Number: 40334

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces olivaceoviridis DSM 40334 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1921
  • Matching level: species

strain history

@refhistory
9466<- E.B. Shirling, ISP <- G.F. Gauze, INA
67770KCC S-0499 <-- IFO 13066 <-- SAJ <-- ISP 5334 <-- INA 11584.

doi: 10.13145/bacdive15435.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces olivaceoviridis
  • full scientific name: Streptomyces olivaceoviridis (Preobrazhenskaya and Ryabova 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces olivaceoviridis

@ref: 9466

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces olivaceoviridis

full scientific name: Streptomyces olivaceoviridis (Preobrazhenskaya and Ryabova 1957) Pridham et al. 1958

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.854
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9466GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9466ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
18585positiveoptimum28mesophilic
9466positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1858517234glucose+
1858522599arabinose+
1858517992sucrose+
1858518222xylose-
1858517268myo-inositol-
1858529864mannitol+
1858528757fructose+
1858526546rhamnose+
1858516634raffinose-
1858562968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18585+++-+-++-++

Isolation, sampling and environmental information

isolation

  • @ref: 9466
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185851German classification
94661Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces olivaceoviridis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4499D44191120ena1921
20218Streptomyces olivaceoviridis strain KCTC 9132 16S ribosomal RNA gene, partial sequenceAY9998121415ena1921
20218Streptomyces olivaceoviridis gene for 16S rRNA, partial sequence, strain: NBRC 13066AB1842881477ena1921

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces olivaceoviridis JCM 4499GCA_014650115scaffoldncbi1921
66792Streptomyces olivaceoviridis strain JCM 44991921.3wgspatric1921

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.695no
gram-positiveyes87.709no
anaerobicno98.716no
aerobicyes92.5no
halophileno94.058no
spore-formingyes94.594no
glucose-utilyes87.25no
thermophileno98.658no
motileno94.036no
glucose-fermentno89.677no

External links

@ref: 9466

culture collection no.: DSM 40334, ATCC 23630, ATCC 25478, CBS 888.69, IFO 13066, INA 11584, ISP 5334, NBRC 13066, RIA 1258, JCM 4499, BCRC 15145, CGMCC 4.1430, IMET 43128, KCTC 9132, LMG 19324, NCIMB 9982, NRRL B-12280, VKM Ac-1852

straininfo link

  • @ref: 84522
  • straininfo: 14107

literature

  • topic: Phylogeny
  • Pubmed-ID: 30816228
  • title: Streptomyces monashensis sp. nov., a novel mangrove soil actinobacterium from East Malaysia with antioxidative potential.
  • authors: Law JW, Ser HL, Ab Mutalib NS, Saokaew S, Duangjai A, Khan TM, Chan KG, Goh BH, Lee LH
  • journal: Sci Rep
  • DOI: 10.1038/s41598-019-39592-6
  • year: 2019
  • mesh: Antineoplastic Agents/isolation & purification/metabolism/*pharmacology, Antioxidants/isolation & purification/metabolism/*pharmacology, Bacterial Typing Techniques, Base Composition, Cell Survival/drug effects, DNA, Bacterial/isolation & purification, HCT116 Cells, Humans, Malaysia, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/genetics/isolation & purification/*metabolism, Superoxides/antagonists & inhibitors
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9466Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40334)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40334
18585Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40334.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84522Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14107.1StrainInfo: A central database for resolving microbial strain identifiers