Strain identifier
BacDive ID: 15432
Type strain: 
Species: Streptomyces ochraceiscleroticus
Strain Designation: 10A-30
Strain history: KCC A-0048 <-- RIA 710 (V. D. Kuznetsov 10A-30).
NCBI tax ID(s): 47761 (species)
version 9.3 (current version)
General
@ref: 9670
BacDive-ID: 15432
DSM-Number: 40594
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces ochraceiscleroticus 10A-30 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 47761
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9670 | <- E.B. Shirling, ISP <- ATCC <- V.D. Kuznetsov, RIA, 10A-30 |
| 67770 | KCC A-0048 <-- RIA 710 (V. D. Kuznetsov 10A-30). |
doi: 10.13145/bacdive15432.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces ochraceiscleroticus
- full scientific name: Streptomyces ochraceiscleroticus Pridham 1970 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Chainia ochracea
@ref: 9670
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces ochraceiscleroticus
full scientific name: Streptomyces ochraceiscleroticus Pridham 1970 emend. Nouioui et al. 2018
strain designation: 10A-30
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 99.9 | |
| 125439 | 90.7 | no |
multimedia
- @ref: 9670
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40594.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9670 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9670 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 9670 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 98.8
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | yes | 92.7 |
| 125438 | yes | 91.436 |
Isolation, sampling and environmental information
isolation
- @ref: 9670
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_134.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_119;99_134&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: HQ244444
- Sequence Identity:
- Total samples: 438
- soil counts: 379
- aquatic counts: 28
- animal counts: 28
- plant counts: 3
Safety information
risk assessment
- @ref: 9670
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces ochraceiscleroticus strain CGMCC 4.1096 16S ribosomal RNA gene, partial sequence | HQ244444 | 1380 | nuccore | 47761 |
| 20218 | Streptomyces ochraceiscleroticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4801 | D44372 | 121 | nuccore | 47761 |
| 20218 | Streptomyces ochraceiscleroticus gene for 16S rRNA, partial sequence, strain: NBRC 13483 | AB184435 | 1477 | nuccore | 47761 |
| 20218 | Streptomyces ochraceiscleroticus strain NRRL B-3041T 16S ribosomal RNA gene, partial sequence | DQ442533 | 1457 | nuccore | 47761 |
| 9670 | Streptomyces ochraceiscleroticus gene for 16S rRNA, partial sequence, strain: NBRC 12394 | AB184094 | 1480 | nuccore | 47761 |
Genome sequences
- @ref: 67770
- description: Streptomyces ochraceiscleroticus NRRL ISP-5594
- accession: GCA_000720485
- assembly level: contig
- database: ncbi
- NCBI tax ID: 47761
GC content
- @ref: 67770
- GC-content: 71.4
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 87.31 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.501 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.134 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 91.436 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.5 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 83 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 92.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 90.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.8 |
External links
@ref: 9670
culture collection no.: DSM 40594, ATCC 15814, CBS 168.62, CBS 784.72, DSM 43155, IFO 13483, ISP 5594, JCM 3048, JCM 4801, KCC A-0048, KCC S-0801, NBRC 13483, RIA 1444, RIA 710, BCRC 13310, CGMCC 4.1096, IFO 12394, IMET 43492, LMG 19349, NBRC 12394, NRRL B-3041, NRRL ISP-5594, PCM 2307, VKM Ac-651
straininfo link
- @ref: 84519
- straininfo: 14115
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9670 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40594) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40594 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 84519 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID14115.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |