Strain identifier

BacDive ID: 15432

Type strain: Yes

Species: Streptomyces ochraceiscleroticus

Strain Designation: 10A-30

Strain history: KCC A-0048 <-- RIA 710 (V. D. Kuznetsov 10A-30).

NCBI tax ID(s): 47761 (species)

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General

@ref: 9670

BacDive-ID: 15432

DSM-Number: 40594

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces ochraceiscleroticus 10A-30 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 47761
  • Matching level: species

strain history

@refhistory
9670<- E.B. Shirling, ISP <- ATCC <- V.D. Kuznetsov, RIA, 10A-30
67770KCC A-0048 <-- RIA 710 (V. D. Kuznetsov 10A-30).

doi: 10.13145/bacdive15432.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces ochraceiscleroticus
  • full scientific name: Streptomyces ochraceiscleroticus Pridham 1970 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Chainia ochracea

@ref: 9670

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces ochraceiscleroticus

full scientific name: Streptomyces ochraceiscleroticus Pridham 1970 emend. Nouioui et al. 2018

strain designation: 10A-30

type strain: yes

Morphology

multimedia

  • @ref: 9670
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40594.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9670GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9670STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9670positivegrowth28mesophilic
67770positivegrowth28mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 9670
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_134.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_119;99_134&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: HQ244444
  • Sequence Identity:
  • Total samples: 438
  • soil counts: 379
  • aquatic counts: 28
  • animal counts: 28
  • plant counts: 3

Safety information

risk assessment

  • @ref: 9670
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces ochraceiscleroticus strain CGMCC 4.1096 16S ribosomal RNA gene, partial sequenceHQ2444441380ena47761
20218Streptomyces ochraceiscleroticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4801D44372121ena47761
20218Streptomyces ochraceiscleroticus gene for 16S rRNA, partial sequence, strain: NBRC 13483AB1844351477ena47761
20218Streptomyces ochraceiscleroticus strain NRRL B-3041T 16S ribosomal RNA gene, partial sequenceDQ4425331457ena47761
9670Streptomyces ochraceiscleroticus gene for 16S rRNA, partial sequence, strain: NBRC 12394AB1840941480ena47761

Genome sequences

  • @ref: 67770
  • description: Streptomyces ochraceiscleroticus NRRL ISP-5594
  • accession: GCA_000720485
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 47761

GC content

  • @ref: 67770
  • GC-content: 71.4
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.888no
flagellatedno97.727no
gram-positiveyes88.172no
anaerobicno98.875no
halophileno88.747no
spore-formingyes95.442no
thermophileno96.529yes
glucose-utilyes90.954no
aerobicyes92.392no
glucose-fermentno90.435no

External links

@ref: 9670

culture collection no.: DSM 40594, ATCC 15814, CBS 168.62, CBS 784.72, DSM 43155, IFO 13483, ISP 5594, JCM 3048, JCM 4801, KCC A-0048, KCC S-0801, NBRC 13483, RIA 1444, RIA 710, BCRC 13310, CGMCC 4.1096, IFO 12394, IMET 43492, LMG 19349, NBRC 12394, NRRL B-3041, NRRL ISP-5594, PCM 2307, VKM Ac-651

straininfo link

  • @ref: 84519
  • straininfo: 14115

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9670Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40594)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40594
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84519Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14115.1StrainInfo: A central database for resolving microbial strain identifiers