Strain identifier

BacDive ID: 15429

Type strain: Yes

Species: Streptomyces nogalater

Strain history: KCC S-0553 <-- NRRL 3035 <-- Upjohn Co., USA.

NCBI tax ID(s): 38314 (species)

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General

@ref: 9631

BacDive-ID: 15429

DSM-Number: 40546

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces nogalater DSM 40546 is a mesophilic bacterium that produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 38314
  • Matching level: species

strain history

@refhistory
9631<- E.B. Shirling, ISP <- NRRL <- Upjohn Co
67770KCC S-0553 <-- NRRL 3035 <-- Upjohn Co., USA.

doi: 10.13145/bacdive15429.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces nogalater
  • full scientific name: Streptomyces nogalater Bhuyan and Dietz 1966 (Approved Lists 1980)

@ref: 9631

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces nogalater

full scientific name: Streptomyces nogalater Bhuyan and Dietz 1966

type strain: yes

Morphology

multimedia

@refmultimedia contentintellectual property rightscaption
9631https://www.dsmz.de/microorganisms/photos/DSM_40546-1.jpg© Leibniz-Institut DSMZ
9631https://www.dsmz.de/microorganisms/photos/DSM_40546.jpg© Leibniz-Institut DSMZMedium 65 28°C

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9631GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9631ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
18606positiveoptimum28mesophilic
9631positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9631nogalamycin
20216Nogalamycin (Nogalacin, U-15167)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1860617234glucose+
1860622599arabinose+
1860617992sucrose-
1860618222xylose-
1860617268myo-inositol-
1860629864mannitol+
1860628757fructose+
1860626546rhamnose-
1860616634raffinose-
1860662968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6777044504nogalamycinyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18606+++++++++++++-+-++-

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18606+++++-+--++

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
186061German classification
96311Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces nogalater gene for 16S ribosomal RNA, partial sequence, strain: JCM 4799D44370120ena38314
9631Streptomyces nogalater gene for 16S rRNA, partial sequence, strain: NBRC 13445AB1844081477ena38314
9631Streptomyces nogalater gene for 16S rRNAAB0458861485ena38314
9631Streptomyces nogalater gene for 16S rRNA, partial sequece, strain:TT2-9AB2318051446ena38314

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces nogalater ATCC 274512563366706draftimg38314
66792Streptomyces nogalater ATCC274512582581468draftimg38314
66792Streptomyces nogalater ATCC 274512563366707draftimg38314

External links

@ref: 9631

culture collection no.: DSM 40546, ATCC 27451, CBS 746.72, IFO 13445, ISP 5546, JCM 4553, NBRC 13445, NRRL 3035, RIA 1406, BCRC 12316, CBS 238.69, CGMCC 4.1442, CGMCC 4.2114, HAMBI 951, IMET 43360, JCM 4799, LMG 19338, LMG 5981, NBRC 101833, NCIMB 9489, VKM Ac-1290

straininfo link

  • @ref: 84516
  • straininfo: 5017

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Cultivation330365Spontaneous and induced variability in Streptomyces nogalater producing nogalamycin.Klanova K, Blumauerova M, Vanek ZFolia Microbiol (Praha)10.1007/BF028776581977Bacteriological Techniques, Culture Media, Immersion, Naphthacenes/*biosynthesis, Nogalamycin/*biosynthesis/isolation & purification, Streptomyces/*metabolismEnzymology
Metabolism9349712Characterization of Streptomyces nogalater genes encoding enzymes involved in glycosylation steps in nogalamycin biosynthesis.Torkkell S, Ylihonko K, Hakala J, Skurnik M, Mantsala PMol Gen Genet10.1007/s0043800505621997Aclarubicin/chemistry/metabolism, Amino Acid Sequence, Cloning, Molecular, DNA, Bacterial/analysis/genetics, Daunorubicin/metabolism, Genes, Bacterial, Genetic Complementation Test, Molecular Sequence Data, Nogalamycin/*metabolism, Open Reading Frames, Plasmids, Racemases and Epimerases/*genetics/*metabolism, Restriction Mapping, Rhamnose/metabolism, Sequence Alignment, Sequence Analysis, DNA, Streptomyces/*genetics/*metabolism, UDPglucose 4-Epimerase/geneticsEnzymology
Phylogeny25218304Streptomyces canchipurensis sp. nov., isolated from a limestone habitat.Li WJ, Nimaichand S, Jiang Z, Liu MJ, Khieu TN, Kim CJ, Hozzein WN, Park DJ, Wadaan MA, Ningthoujam DSAntonie Van Leeuwenhoek10.1007/s10482-014-0281-62014Bacterial Typing Techniques, *Calcium Carbonate, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Environmental Microbiology, Fatty Acids/analysis, India, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysisGenetics
Phylogeny28984216Streptomyces roietensis sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of jasmine rice, Oryza sativa KDML 105.Kaewkla O, Franco CMMInt J Syst Evol Microbiol10.1099/ijsem.0.0024022017Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oryza/*microbiology, *Phylogeny, Plant Stems/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, ThailandTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9631Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40546)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40546
18606Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40546.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
84516Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID5017.1StrainInfo: A central database for resolving microbial strain identifiers