Strain identifier
BacDive ID: 15418
Type strain: 
Species: Streptomyces mutabilis
Strain history: KCC S-0400 <-- IFO 12800 <-- SAJ <-- ISP 5169 <-- T. P. Preobrazhenskaya INA B-472.
NCBI tax ID(s): 67332 (species)
version 8.1 (current version)
General
@ref: 9364
BacDive-ID: 15418
DSM-Number: 40169
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Streptomyces mutabilis DSM 40169 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 67332
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9364 | <- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA |
| 67770 | KCC S-0400 <-- IFO 12800 <-- SAJ <-- ISP 5169 <-- T. P. Preobrazhenskaya INA B-472. |
doi: 10.13145/bacdive15418.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces mutabilis
- full scientific name: Streptomyces mutabilis (Preobrazhenskaya and Ryabova 1957) Pridham et al. 1958 (Approved Lists 1980)
synonyms
@ref synonym 20215 Actinomyces mutabilis 20215 Streptomyces luteus
@ref: 9364
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces mutabilis
full scientific name: Streptomyces mutabilis (Preobrazhenskaya and Ryabova 1957) Pridham et al. 1958
type strain: yes
Culture and growth conditions
culture medium
- @ref: 9364
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9364 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
| @ref | compound |
|---|---|
| 20216 | Antibiotic agent |
| 20216 | Antifungal agent |
Isolation, sampling and environmental information
isolation
- @ref: 9364
- sample type: soil
- geographic location: ASSR
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_3171.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_3171&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: KC954557
- Sequence Identity:
- Total samples: 28
- soil counts: 12
- animal counts: 16
Safety information
risk assessment
- @ref: 9364
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces mutabilis strain DSM 40169 16S ribosomal RNA gene, partial sequence | KC954557 | 1347 | ena | 67332 |
| 20218 | Streptomyces mutabilis strain NRRL ISP-5169 16S ribosomal RNA gene, partial sequence | EF178679 | 1484 | ena | 67332 |
| 20218 | Streptomyces olivoverticillatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4400 | D44007 | 120 | ena | 66427 |
| 20218 | Streptomyces mutabilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4400 | D44115 | 121 | ena | 67332 |
| 20218 | Streptomyces mutabilis gene for 16S rRNA, partial sequence, strain: NBRC 12800 | AB184156 | 1472 | ena | 67332 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces mutabilis strain JCM 4400 | 67332.5 | wgs | patric | 67332 |
| 67770 | Streptomyces mutabilis JCM 4400 | GCA_014649815 | scaffold | ncbi | 67332 |
GC content
- @ref: 67770
- GC-content: 70.7
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | yes | 90.162 | no |
| anaerobic | no | 99.258 | no |
| halophile | no | 90.348 | no |
| spore-forming | yes | 97.047 | no |
| glucose-util | yes | 88.949 | no |
| thermophile | no | 97.943 | yes |
| flagellated | no | 97.832 | no |
| motile | no | 94.043 | no |
| aerobic | yes | 94.914 | no |
| glucose-ferment | no | 87.701 | no |
External links
@ref: 9364
culture collection no.: DSM 40169, ATCC 19789, ATCC 19919, CBS 541.68, IFO 12800, IMET 43509, INA B-472, ISP 5169, JCM 4400, KCC S-0400, NBRC 12800, NRRL ISP-5169, RIA 1068, VKM Ac-1851, BCRC 13715, CGMCC 4.1978, HAMBI 1069, MTCC 1393
straininfo link
- @ref: 84506
- straininfo: 265703
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23920229 | Biocontrol of Rhizoctonia solani damping-off and promotion of tomato plant growth by endophytic actinomycetes isolated from native plants of Algerian Sahara. | Goudjal Y, Toumatia O, Yekkour A, Sabaou N, Mathieu F, Zitouni A | Microbiol Res | 10.1016/j.micres.2013.06.014 | 2013 | Africa, Northern, Algeria, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Endophytes/classification/genetics/growth & development/*isolation & purification, Lycopersicon esculentum/growth & development/*microbiology, *Microbial Interactions, Molecular Sequence Data, Pest Control, Biological/*methods, Phylogeny, Plant Diseases/*microbiology/prevention & control, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Rhizoctonia/*growth & development, Sequence Analysis, DNA, Streptomyces/classification/genetics/growth & development/*isolation & purification | Enzymology |
| Phylogeny | 25284744 | Antifungal properties of an actinomycin D-producing strain, Streptomyces sp. IA1, isolated from a Saharan soil. | Toumatia O, Yekkour A, Goudjal Y, Riba A, Coppel Y, Mathieu F, Sabaou N, Zitouni A | J Basic Microbiol | 10.1002/jobm.201400202 | 2014 | Algeria, Antibiosis, Antifungal Agents/*isolation & purification/*pharmacology, Biological Control Agents, Chromatography, Reverse-Phase, Chromatography, Thin Layer, Dactinomycin/*biosynthesis/chemistry/isolation & purification/*pharmacology, Flax/microbiology, Fusarium/*drug effects/physiology, Mass Spectrometry, Microbial Sensitivity Tests, Nuclear Magnetic Resonance, Biomolecular, Plant Diseases/*microbiology, Seedlings/growth & development/physiology, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/classification/genetics/isolation & purification/*metabolism, Vicia faba/microbiology | Enzymology |
| Phylogeny | 27107984 | Activity of 2,4-Di-tert-butylphenol produced by a strain of Streptomyces mutabilis isolated from a Saharan soil against Candida albicans and other pathogenic fungi. | Belghit S, Driche EH, Bijani C, Zitouni A, Sabaou N, Badji B, Mathieu F | J Mycol Med | 10.1016/j.mycmed.2016.03.001 | 2016 | Africa, Northern, *Antifungal Agents/isolation & purification/metabolism/pharmacology, Candida albicans/*drug effects/growth & development/pathogenicity, Fungi/*drug effects/growth & development/pathogenicity, Microbial Sensitivity Tests, Phenols/isolation & purification/*metabolism/*pharmacology, RNA, Ribosomal, 16S/analysis, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/classification/genetics/isolation & purification/*metabolism | Enzymology |
| Phylogeny | 27902245 | Streptomyces luteus sp. nov., an actinomycete isolated from soil. | Luo XX, Kai L, Wang Y, Wan CX, Zhang LL | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001611 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9364 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40169) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40169 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 84506 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265703.1 | StrainInfo: A central database for resolving microbial strain identifiers |