Strain identifier

BacDive ID: 154129

Type strain: No

Species: Bifidobacterium longum subsp. infantis

NCBI tax ID(s): 537937 (strain), 1682 (subspecies)

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General

@ref: 59567

BacDive-ID: 154129

keywords: genome sequence, Bacteria, anaerobe, mesophilic

description: Bifidobacterium longum subsp. infantis CCUG 52486 is an anaerobe, mesophilic bacterium that was isolated from Human feces,healthy elderly Italian individuals.

NCBI tax id

NCBI tax idMatching level
537937strain
1682subspecies

doi: 10.13145/bacdive154129.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium longum subsp. infantis
  • full scientific name: Bifidobacterium longum subsp. infantis (Reuter 1963) Mattarelli et al. 2008

  • synonyms

    • @ref: 20215
    • synonym: Bifidobacterium infantis

@ref: 59567

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium longum subsp. infantis

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.343
69480100positive

Culture and growth conditions

culture temp

  • @ref: 59567
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
59567anaerobe
69480anaerobe99.703

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.996

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source
6838129016arginine-hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose+builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6838035581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6838035581indole-
6838115688acetoin-

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
59567--++-+++---+-----++-++-+-++-+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
59567--+-+-+--++++----++------++-----

Isolation, sampling and environmental information

isolation

  • @ref: 59567
  • sample type: Human feces,healthy elderly Italian individuals
  • geographic location: Camerino
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Infection#Patient

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bifidobacterium longum subsp. infantis CCUG 52486GCA_000155415scaffoldncbi537937
66792Bifidobacterium longum subsp. infantis CCUG 52486537937.5wgspatric537937
66792Bifidobacterium longum longum CCUG 52486643886216draftimg537937

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno88no
motileno94.093no
flagellatedno97.004no
gram-positiveyes91.324no
anaerobicyes98.073no
aerobicno96.818no
halophileno74.538no
spore-formingno96.206no
thermophileno97.324no
glucose-utilyes86.126no
glucose-fermentyes84.282no

External links

@ref: 59567

culture collection no.: CCUG 52486

literature

  • topic: Metabolism
  • Pubmed-ID: 24751074
  • title: Emulsifying, rheological and physicochemical properties of exopolysaccharide produced by Bifidobacterium longum subsp. infantis CCUG 52486 and Bifidobacterium infantis NCIMB 702205.
  • authors: Prasanna PH, Bell A, Grandison AS, Charalampopoulos D
  • journal: Carbohydr Polym
  • DOI: 10.1016/j.carbpol.2012.05.075
  • year: 2012
  • mesh: Bifidobacterium/*chemistry/metabolism, Chemical Phenomena, Dose-Response Relationship, Drug, Emulsions/chemistry/pharmacology, Polysaccharides, Bacterial/*biosynthesis/chemistry/*isolation & purification/pharmacology, *Rheology/methods
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
59567Curators of the CCUGhttps://www.ccug.se/strain?id=52486Culture Collection University of Gothenburg (CCUG) (CCUG 52486)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes