Strain identifier

BacDive ID: 15412

Type strain: Yes

Species: Streptomyces mirabilis

Strain Designation: AC-680 (= strain Ankermann)

Strain history: KCC S-0551 <-- NRRL B-2400 <-- Lederle Labs.; AC-860.

NCBI tax ID(s): 68239 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 9636

BacDive-ID: 15412

DSM-Number: 40553

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces mirabilis AC-680 is a mesophilic bacterium that produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 68239
  • Matching level: species

strain history

@refhistory
9636<- E.B. Shirling, ISP <- H.D. Tresner, Lederle Labs., AC-680 (= strain Ankermann)
67770KCC S-0551 <-- NRRL B-2400 <-- Lederle Labs.; AC-860.

doi: 10.13145/bacdive15412.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces mirabilis
  • full scientific name: Streptomyces mirabilis Ruschmann 1952 (Approved Lists 1980)

@ref: 9636

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces mirabilis

full scientific name: Streptomyces mirabilis Ruschmann 1952

strain designation: AC-680 (= strain Ankermann)

type strain: yes

Morphology

multimedia

  • @ref: 9636
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40553.jpg
  • caption: Medium 84 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9636GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9636ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9636positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9636miramycin
67770Miramycin

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_3832.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_2301;99_3832&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AF112180
  • Sequence Identity:
  • Total samples: 2480
  • soil counts: 1454
  • aquatic counts: 120
  • animal counts: 56
  • plant counts: 850

Safety information

risk assessment

  • @ref: 9636
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces mirabilis strain ATCC27447 16S ribosomal RNA gene, partial sequenceAF1121801466ena68239
20218Streptomyces mirabilis strain DSM 40553 16S ribosomal RNA gene, partial sequenceAY9997301448ena68239
20218Streptomyces mirabilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4791D44366120ena68239
20218Streptomyces mirabilis gene for 16S rRNA, partial sequence, strain: NBRC 13450AB1844121472ena68239

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces mirabilis JCM 4551GCA_014650275scaffoldncbi68239
66792Streptomyces mirabilis strain JCM 455168239.8wgspatric68239

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.193no
gram-positiveyes86.741no
anaerobicno99.177no
aerobicyes91.844no
halophileno95.969no
spore-formingyes92.081no
glucose-utilyes89.251no
thermophileno98.847yes
motileno94.973no
glucose-fermentno89.854no

External links

@ref: 9636

culture collection no.: DSM 40553, ATCC 27447, CBS 751.72, IFO 13450, ISP 5553, JCM 4551, JCM 4791, KCC S-0551, KCC S-0791, NBRC 13450, NRRL B-2400, RIA 1411, BCRC 15200, CGMCC 4.1988

straininfo link

  • @ref: 84501
  • straininfo: 297061

literature

Pubmed-IDtitleauthorsjournalDOIyeartopicmeshtopic2
9797282Selection and characterization of microorganisms utilizing thaxtomin A, a phytotoxin produced by streptomyces scabiesDoumbou CL, Akimov V V, Beaulieu CAppl Environ Microbiol10.1128/AEM.64.11.4313-4316.19981998
15803387Streptomyces roseoalbus sp. nov., an actinomycete isolated from soil in Yunnan, China.Xu LH, Jiang Y, Li WJ, Wen ML, Li MG, Jiang CLAntonie Van Leeuwenhoek10.1007/s10482-004-3720-y2005PhylogenyBacterial Typing Techniques, Base Sequence, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Phospholipids/analysis/isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification, Vitamin K 2/analysis/isolation & purificationEnzymology
22865027Streptomyces erringtonii sp. nov. and Streptomyces kaempferi sp. nov., isolated from a hay meadow soil.Santhanam R, Rong X, Huang Y, Goodfellow MAntonie Van Leeuwenhoek10.1007/s10482-012-9788-x2012PhylogenyBacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiologyGenetics
29995193Streptomyces lutosisoli sp. nov., a novel actinomycete isolated from muddy soil.Shen Y, Sun T, Jiang S, Mu S, Li D, Guo X, Zhang J, Zhao J, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-018-1129-22018PhylogenyBacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil/chemistry, *Soil Microbiology, Streptomyces/classification/genetics/*isolation & purification/metabolismMetabolism
33180018Steptomyces fagopyri sp. nov., a novel actinomycete isolated from rhizospheric soil of Fagopyrum dibotrys.Guo Y, Tang X, Hu S, Li K, Zhou M, Jian GInt J Syst Evol Microbiol10.1099/ijsem.0.0045552020PhylogenyBacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fagopyrum/*microbiology, Fatty Acids/chemistry, Genome Size, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9636Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40553)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40553
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84501Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297061.1StrainInfo: A central database for resolving microbial strain identifiers