Strain identifier
BacDive ID: 15412
Type strain:
Species: Streptomyces mirabilis
Strain Designation: AC-680 (= strain Ankermann)
Strain history: KCC S-0551 <-- NRRL B-2400 <-- Lederle Labs.; AC-860.
NCBI tax ID(s): 68239 (species)
General
@ref: 9636
BacDive-ID: 15412
DSM-Number: 40553
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Streptomyces mirabilis AC-680 is a mesophilic bacterium that produces antibiotic compounds.
NCBI tax id
- NCBI tax id: 68239
- Matching level: species
strain history
@ref | history |
---|---|
9636 | <- E.B. Shirling, ISP <- H.D. Tresner, Lederle Labs., AC-680 (= strain Ankermann) |
67770 | KCC S-0551 <-- NRRL B-2400 <-- Lederle Labs.; AC-860. |
doi: 10.13145/bacdive15412.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces mirabilis
- full scientific name: Streptomyces mirabilis Ruschmann 1952 (Approved Lists 1980)
@ref: 9636
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces mirabilis
full scientific name: Streptomyces mirabilis Ruschmann 1952
strain designation: AC-680 (= strain Ankermann)
type strain: yes
Morphology
multimedia
- @ref: 9636
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40553.jpg
- caption: Medium 84 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9636 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9636 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9636 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
@ref | compound |
---|---|
9636 | miramycin |
67770 | Miramycin |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_3832.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_2301;99_3832&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AF112180
- Sequence Identity:
- Total samples: 2480
- soil counts: 1454
- aquatic counts: 120
- animal counts: 56
- plant counts: 850
Safety information
risk assessment
- @ref: 9636
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces mirabilis strain ATCC27447 16S ribosomal RNA gene, partial sequence | AF112180 | 1466 | ena | 68239 |
20218 | Streptomyces mirabilis strain DSM 40553 16S ribosomal RNA gene, partial sequence | AY999730 | 1448 | ena | 68239 |
20218 | Streptomyces mirabilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4791 | D44366 | 120 | ena | 68239 |
20218 | Streptomyces mirabilis gene for 16S rRNA, partial sequence, strain: NBRC 13450 | AB184412 | 1472 | ena | 68239 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces mirabilis JCM 4551 | GCA_014650275 | scaffold | ncbi | 68239 |
66792 | Streptomyces mirabilis strain JCM 4551 | 68239.8 | wgs | patric | 68239 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 98.193 | no |
gram-positive | yes | 86.741 | no |
anaerobic | no | 99.177 | no |
aerobic | yes | 91.844 | no |
halophile | no | 95.969 | no |
spore-forming | yes | 92.081 | no |
glucose-util | yes | 89.251 | no |
thermophile | no | 98.847 | yes |
motile | no | 94.973 | no |
glucose-ferment | no | 89.854 | no |
External links
@ref: 9636
culture collection no.: DSM 40553, ATCC 27447, CBS 751.72, IFO 13450, ISP 5553, JCM 4551, JCM 4791, KCC S-0551, KCC S-0791, NBRC 13450, NRRL B-2400, RIA 1411, BCRC 15200, CGMCC 4.1988
straininfo link
- @ref: 84501
- straininfo: 297061
literature
Pubmed-ID | title | authors | journal | DOI | year | topic | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
9797282 | Selection and characterization of microorganisms utilizing thaxtomin A, a phytotoxin produced by streptomyces scabies | Doumbou CL, Akimov V V, Beaulieu C | Appl Environ Microbiol | 10.1128/AEM.64.11.4313-4316.1998 | 1998 | |||
15803387 | Streptomyces roseoalbus sp. nov., an actinomycete isolated from soil in Yunnan, China. | Xu LH, Jiang Y, Li WJ, Wen ML, Li MG, Jiang CL | Antonie Van Leeuwenhoek | 10.1007/s10482-004-3720-y | 2005 | Phylogeny | Bacterial Typing Techniques, Base Sequence, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Phospholipids/analysis/isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification, Vitamin K 2/analysis/isolation & purification | Enzymology |
22865027 | Streptomyces erringtonii sp. nov. and Streptomyces kaempferi sp. nov., isolated from a hay meadow soil. | Santhanam R, Rong X, Huang Y, Goodfellow M | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9788-x | 2012 | Phylogeny | Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiology | Genetics |
29995193 | Streptomyces lutosisoli sp. nov., a novel actinomycete isolated from muddy soil. | Shen Y, Sun T, Jiang S, Mu S, Li D, Guo X, Zhang J, Zhao J, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1129-2 | 2018 | Phylogeny | Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil/chemistry, *Soil Microbiology, Streptomyces/classification/genetics/*isolation & purification/metabolism | Metabolism |
33180018 | Steptomyces fagopyri sp. nov., a novel actinomycete isolated from rhizospheric soil of Fagopyrum dibotrys. | Guo Y, Tang X, Hu S, Li K, Zhou M, Jian G | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004555 | 2020 | Phylogeny | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fagopyrum/*microbiology, Fatty Acids/chemistry, Genome Size, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9636 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40553) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40553 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
84501 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297061.1 | StrainInfo: A central database for resolving microbial strain identifiers |