Strain identifier

BacDive ID: 154011

Type strain: No

Species: Pseudomonas aeruginosa

NCBI tax ID(s): 287 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.3 (current version):
version 9.2:
version 9.1:
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 9.3 (current version)

General

@ref: 59387

BacDive-ID: 154011

keywords: genome sequence, Bacteria, aerobe, motile

description: Pseudomonas aeruginosa CCUG 51971 is an aerobe, motile bacterium that was isolated from Human urine,Greek citizen.

NCBI tax id

  • NCBI tax id: 287
  • Matching level: species

doi: 10.13145/bacdive154011.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas aeruginosa
  • full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium aeruginosum

@ref: 59387

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas aeruginosa

type strain: no

Morphology

cell morphology

@refgram stainconfidencemotility
125439negative98.8
12543990.7yes
12543892.744yes
125438negative97.5

Physiology and metabolism

oxygen tolerance

  • @ref: 125438
  • oxygen tolerance: aerobe
  • confidence: 95.888

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 99

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
59387+--+--+++--++-+++++-+

Isolation, sampling and environmental information

isolation

  • @ref: 59387
  • sample type: Human urine,Greek citizen
  • sampling date: 2001-11-01
  • geographic location: Stockholm
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine
#Infection#Patient

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas aeruginosa CCUG 51971GCA_008195485completencbi287
66792Pseudomonas aeruginosa strain CCUG 51971287.9877completepatric287

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.5no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.86no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes95.888no
125438spore-formingspore-formingAbility to form endo- or exosporesno86.45no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno99.3no
125438motile2+flagellatedAbility to perform flagellated movementyes92.744no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno99
125439BacteriaNetmotilityAbility to perform movementyes90.7
125439BacteriaNetgram_stainReaction to gram-stainingnegative98.8
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthaerobe61.8

External links

@ref: 59387

culture collection no.: CCUG 51971

straininfo link

  • @ref: 107727
  • straininfo: 303245

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
59387Curators of the CCUGhttps://www.ccug.se/strain?id=51971Culture Collection University of Gothenburg (CCUG) (CCUG 51971)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
107727Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID303245.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG