Strain identifier

BacDive ID: 153993

Type strain: No

Species: Salmonella enterica

NCBI tax ID(s): 28901 (species)

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General

@ref: 59351

BacDive-ID: 153993

keywords: genome sequence, Bacteria, aerobe, mesophilic

description: Salmonella enterica CCUG 51871 is an aerobe, mesophilic bacterium that was isolated from Not know - passaged in a mouse.

NCBI tax id

  • NCBI tax id: 28901
  • Matching level: species

doi: 10.13145/bacdive153993.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica
  • full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

  • synonyms

    @refsynonym
    20215Bacillus typhi
    20215Bacillus typhimurium
    20215Bacillus enteritidis
    20215Bacillus choleraesuis
    20215Salmonella typhi
    20215Salmonella choleraesuis
    20215Salmonella paratyphi
    20215Salmonella typhimurium
    20215Salmonella enteritidis

@ref: 59351

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica

type strain: no

Culture and growth conditions

culture temp

  • @ref: 59351
  • growth: positive
  • type: growth
  • temperature: 30-37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 59351
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine+degradation
6837429016arginine+hydrolysis
6837425094lysine+degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan-energy source
6837417634D-glucose+builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose+builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol+builds acid from

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase-3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase+4.1.1.18
68374arginine dihydrolase+3.5.3.6
68374ornithine decarboxylase+4.1.1.17

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    59351C12:03.912
    59351C13:00.313
    59351C14:05.214
    59351C15:00.715
    59351C16:029.116
    59351C17:01.417
    59351C18:00.818
    59351C14:0 2OH115.205
    59351C14:0 3OH/C16:1 ISO I8.315.485
    59351C16:1 ω7c8.615.819
    59351C17:0 CYCLO816.888
    59351C18:1 ω7c /12t/9t28.517.824
    59351C18:2 ω6,9c/C18:0 ANTE0.317.724
    59351C19:0 CYCLO ω8c2.818.9
    59351Unidentified0.413.938
    59351unknown 14.5030.814.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
59351+++----++-++-------+-+--+++--+--

Isolation, sampling and environmental information

isolation

  • @ref: 59351
  • sample type: Not know - passaged in a mouse

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Muridae (Mouse/Rat)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. enterica serovar Typhimurium NCTC13347GCA_900456925contigncbi90371
66792Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC1334790371.3029wgspatric90371

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.087no
flagellatedyes51.145no
gram-positiveno98.653no
anaerobicno89.842no
halophileno93.82no
spore-formingno93.956no
thermophileno98.794yes
glucose-utilyes92.923no
aerobicyes70.924no
glucose-fermentyes93.057no

External links

@ref: 59351

culture collection no.: CCUG 51871, NCTC 13347

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
59351Curators of the CCUGhttps://www.ccug.se/strain?id=51871Culture Collection University of Gothenburg (CCUG) (CCUG 51871)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68374Automatically annotated from API ID32E