Strain identifier

BacDive ID: 15399

Type strain: Yes

Species: Streptomyces melanosporofaciens

Strain Designation: 1573

Strain history: KCC S-0495 <-- T. Furumai <-- SAJ <-- ISP 5318 <-- Farmitalia FI 1573.

NCBI tax ID(s): 67327 (species)

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General

@ref: 9456

BacDive-ID: 15399

DSM-Number: 40318

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces melanosporofaciens 1573 is an aerobe, spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 67327
  • Matching level: species

strain history

@refhistory
9456<- E.B. Shirling, ISP <- B. Camerino, Farmitalia, Fi 1573
67770KCC S-0495 <-- T. Furumai <-- SAJ <-- ISP 5318 <-- Farmitalia FI 1573.

doi: 10.13145/bacdive15399.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces melanosporofaciens
  • full scientific name: Streptomyces melanosporofaciens Arcamone et al. 1959 (Approved Lists 1980)

@ref: 9456

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces melanosporofaciens

full scientific name: Streptomyces melanosporofaciens Arcamone et al. 1959 emend. Nouioui et al. 2018

strain designation: 1573

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
125439positive99.4
12543990.8no

multimedia

  • @ref: 9456
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40318.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9456GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9456STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf
9456ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperature
9456positivegrowth28
67770positivegrowth28

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
125438aerobe92.715
125439obligate aerobe95.5

spore formation

  • @ref: 125438
  • spore formation: yes
  • confidence: 92.761

compound production

@refcompound
9456elaiophylin(=azalomycin B)
9456melanosporin
67770Melanosporin

metabolite production

  • @ref: 67770
  • Chebi-ID: 77879
  • metabolite: elaiophylin
  • production: yes

Isolation, sampling and environmental information

isolation

  • @ref: 9456
  • sample type: soil
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9456
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces melanosporofaciens strain CGMCC 4.1742 16S ribosomal RNA gene, partial sequenceHQ2444521401nuccore67327
20218Streptomyces melanosporofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4495D44187121nuccore67327
20218Streptomyces melanosporofaciens gene for 16S rRNA, partial sequence, strain: NBRC 13061AB1842831475nuccore67327
20218Streptomyces melanosporofaciens 16S rRNA gene, strain NRRL B-12234TAJ2718871483nuccore67327
20218Streptomyces melanosporofaciens partial 16S rRNA gene, type strain NRRL B-12234TAJ3918371483nuccore67327

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces melanosporofaciens strain DSM 4031867327.3wgspatric67327
66792Streptomyces melanosporofaciens DSM 403182634166371draftimg67327
67770Streptomyces melanosporofaciens DSM 40318GCA_900105695contigncbi67327

GC content

@refGC-contentmethod
6777071thermal denaturation, midpoint method (Tm)
6777071genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes86.2no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.331no
125438spore-formingspore-formingAbility to form endo- or exosporesyes92.761no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes92.715no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97no
125438motile2+flagellatedAbility to perform flagellated movementno88.5no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes89.7
125439BacteriaNetmotilityAbility to perform movementno90.8
125439BacteriaNetgram_stainReaction to gram-stainingpositive99.4
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe95.5

External links

@ref: 9456

culture collection no.: DSM 40318, ATCC 25473, CBS 883.69, IFO 13061, ISP 5318, JCM 4495, NBRC 13061, RIA 1253, BCRC 12064, CGMCC 4.1742, NCIMB 12978, NRRL B-12234, VKM Ac-1864

straininfo link

  • @ref: 84488
  • straininfo: 389365

literature

  • topic: Metabolism
  • Pubmed-ID: 17410874
  • title: [Anionic carbohydrate-containing cell wall polymers of Streptomyces melanosporofaciens and related species].
  • authors: Tul'skaia EM, Shashkov AS, Bueva OV, Evtushenko LI
  • journal: Mikrobiologiia
  • year: 2007
  • mesh: Anions, Carbohydrates/*analysis, Cell Wall/chemistry, Magnetic Resonance Spectroscopy, Polymers/*analysis/chemistry, Streptomyces/*chemistry/metabolism, Teichoic Acids/metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9456Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40318)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40318
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
84488Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389365.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1