Strain identifier
BacDive ID: 15399
Type strain:
Species: Streptomyces melanosporofaciens
Strain Designation: 1573
Strain history: KCC S-0495 <-- T. Furumai <-- SAJ <-- ISP 5318 <-- Farmitalia FI 1573.
NCBI tax ID(s): 67327 (species)
General
@ref: 9456
BacDive-ID: 15399
DSM-Number: 40318
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production
description: Streptomyces melanosporofaciens 1573 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 67327
- Matching level: species
strain history
@ref | history |
---|---|
9456 | <- E.B. Shirling, ISP <- B. Camerino, Farmitalia, Fi 1573 |
67770 | KCC S-0495 <-- T. Furumai <-- SAJ <-- ISP 5318 <-- Farmitalia FI 1573. |
doi: 10.13145/bacdive15399.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces melanosporofaciens
- full scientific name: Streptomyces melanosporofaciens Arcamone et al. 1959 (Approved Lists 1980)
@ref: 9456
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces melanosporofaciens
full scientific name: Streptomyces melanosporofaciens Arcamone et al. 1959 emend. Nouioui et al. 2018
strain designation: 1573
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 93.111 | |
69480 | 100 | positive |
multimedia
- @ref: 9456
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40318.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9456 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9456 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9456 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 99 |
69480 | yes | 100 |
compound production
@ref | compound |
---|---|
9456 | elaiophylin(=azalomycin B) |
9456 | melanosporin |
67770 | Melanosporin |
metabolite production
- @ref: 67770
- Chebi-ID: 77879
- metabolite: elaiophylin
- production: yes
Isolation, sampling and environmental information
isolation
- @ref: 9456
- sample type: soil
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9456
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces melanosporofaciens strain CGMCC 4.1742 16S ribosomal RNA gene, partial sequence | HQ244452 | 1401 | ena | 67327 |
20218 | Streptomyces melanosporofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4495 | D44187 | 121 | ena | 67327 |
20218 | Streptomyces melanosporofaciens gene for 16S rRNA, partial sequence, strain: NBRC 13061 | AB184283 | 1475 | ena | 67327 |
20218 | Streptomyces melanosporofaciens 16S rRNA gene, strain NRRL B-12234T | AJ271887 | 1483 | ena | 67327 |
20218 | Streptomyces melanosporofaciens partial 16S rRNA gene, type strain NRRL B-12234T | AJ391837 | 1483 | ena | 67327 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces melanosporofaciens strain DSM 40318 | 67327.3 | wgs | patric | 67327 |
66792 | Streptomyces melanosporofaciens DSM 40318 | 2634166371 | draft | img | 67327 |
67770 | Streptomyces melanosporofaciens DSM 40318 | GCA_900105695 | contig | ncbi | 67327 |
GC content
@ref | GC-content | method |
---|---|---|
67770 | 71 | thermal denaturation, midpoint method (Tm) |
67770 | 71 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 99 | no |
gram-positive | yes | 86.697 | no |
anaerobic | no | 99.257 | no |
halophile | no | 90.654 | no |
spore-forming | yes | 95.027 | no |
glucose-util | yes | 90.371 | no |
thermophile | no | 98.155 | no |
flagellated | no | 97.973 | no |
motile | no | 92.976 | no |
aerobic | yes | 94.66 | no |
glucose-ferment | no | 90.471 | no |
External links
@ref: 9456
culture collection no.: DSM 40318, ATCC 25473, CBS 883.69, IFO 13061, ISP 5318, JCM 4495, NBRC 13061, RIA 1253, BCRC 12064, CGMCC 4.1742, NCIMB 12978, NRRL B-12234, VKM Ac-1864
straininfo link
- @ref: 84488
- straininfo: 389365
literature
- topic: Metabolism
- Pubmed-ID: 17410874
- title: [Anionic carbohydrate-containing cell wall polymers of Streptomyces melanosporofaciens and related species].
- authors: Tul'skaia EM, Shashkov AS, Bueva OV, Evtushenko LI
- journal: Mikrobiologiia
- year: 2007
- mesh: Anions, Carbohydrates/*analysis, Cell Wall/chemistry, Magnetic Resonance Spectroscopy, Polymers/*analysis/chemistry, Streptomyces/*chemistry/metabolism, Teichoic Acids/metabolism
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9456 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40318) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40318 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
84488 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389365.1 | StrainInfo: A central database for resolving microbial strain identifiers |