Strain identifier
BacDive ID: 15397
Type strain: 
Species: Streptomyces althioticus
Strain Designation: M-ME/17
Strain history: KCC S-0268 <-- RIA 570 <-- Lepetit M-ME/17.
NCBI tax ID(s): 67325 (species)
version 8.1 (current version)
General
@ref: 9250
BacDive-ID: 15397
DSM-Number: 40188
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Streptomyces althioticus M-ME/17 is a mesophilic bacterium that produces antibiotic compounds and was isolated from sea sand.
NCBI tax id
- NCBI tax id: 67325
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9250 | <- E.B. Shirling, ISP <- L.G. Silvestri, Lepetit S.p.A. Lep., M-ME/17 |
| 67770 | KCC S-0268 <-- RIA 570 <-- Lepetit M-ME/17. |
doi: 10.13145/bacdive15397.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces althioticus
- full scientific name: Streptomyces althioticus Yamaguchi et al. 1957 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptomyces matensis 20215 Actinomyces griseorubens 20215 Streptomyces griseorubens
@ref: 9250
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces matensis
full scientific name: Streptomyces matensis Margalith et al. 1959
strain designation: M-ME/17
type strain: yes
Culture and growth conditions
culture medium
- @ref: 9250
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9250 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
| @ref | compound |
|---|---|
| 9250 | matamycin |
| 9250 | althiomycin |
| 20216 | Matamycin (Althiomycin) |
metabolite production
- @ref: 67770
- Chebi-ID: 157683
- metabolite: althiomycin
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 9250 | sea sand | Sicily | Italy | ITA | Europe |
| 67770 | Sea sand | Catania | Italy | ITA | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Sandy |
taxonmaps
- @ref: 69479
- File name: preview.99_408.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_408&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: EF626596
- Sequence Identity:
- Total samples: 50
- soil counts: 30
- animal counts: 18
- plant counts: 2
Safety information
risk assessment
- @ref: 9250
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces matensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4651 | D44286 | 122 | ena | 67325 |
| 20218 | Streptomyces matensis gene for 16S rRNA, partial sequence, strain: NBRC 12889 | AB184221 | 1462 | ena | 67325 |
| 20218 | Streptomyces matensis strain NRRL B-2576 16S ribosomal RNA gene, partial sequence | EF626596 | 1498 | ena | 67325 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces matensis strain JCM 4277 | 67325.3 | wgs | patric | 67325 |
| 67770 | Streptomyces matensis JCM 4277 | GCA_014649175 | scaffold | ncbi | 67325 |
GC content
- @ref: 67770
- GC-content: 72.6
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | yes | 90.694 | no |
| anaerobic | no | 99.296 | no |
| halophile | no | 88.597 | no |
| spore-forming | yes | 96.002 | no |
| glucose-util | yes | 89.557 | no |
| thermophile | no | 98.077 | yes |
| flagellated | no | 97.826 | no |
| motile | no | 94.122 | no |
| aerobic | yes | 95.175 | no |
| glucose-ferment | no | 88.444 | no |
External links
@ref: 9250
culture collection no.: DSM 40188, ATCC 23935, CBS 919.68, ETH 24398, IFO 12889, ISP 5188, JCM 4268, JCM 4277, JCM 4651, NBRC 12889, NRRL B-2576, RIA 1142, BCRC 13785, HAMBI 1048, IMET 42065, NCIMB 9826, RIA 570
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23355697 | Streptomyces wuyuanensis sp. nov., an actinomycete from soil. | Zhang X, Zhang J, Zheng J, Xin D, Xin Y, Pang H | Int J Syst Evol Microbiol | 10.1099/ijs.0.047050-0 | 2013 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Enzymology | 24262544 | Molecular cloning and functional characterization of an endo-beta-1,3-glucanase from Streptomyces matensis ATCC 23935. | Woo JB, Kang HN, Woo EJ, Lee SB | Food Chem | 10.1016/j.foodchem.2013.09.137 | 2013 | Amino Acid Sequence, Antifungal Agents/*chemistry/metabolism/pharmacology, Bacterial Proteins/*chemistry/*genetics/metabolism/pharmacology, Candida albicans/drug effects/growth & development, *Cloning, Molecular, Enzyme Stability, Glycoside Hydrolases/*chemistry/*genetics/metabolism/pharmacology, Streptomyces/chemistry/*enzymology/genetics, Substrate Specificity | Metabolism |
| Phylogeny | 29537363 | Streptomyces fuscigenes sp. nov., isolated from bamboo (Sasa borealis) litter. | Lee HJ, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002706 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 30303477 | Streptomyces lichenis sp. nov., isolated from lichen. | Saeng-In P, Phongsopitanun W, Savarajara A, Tanasupawat S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003052 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lichens/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9250 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40188) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40188 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |