Strain identifier
BacDive ID: 153924
Type strain: 
Species: Aggregatibacter actinomycetemcomitans
NCBI tax ID(s): 714 (species)
version 9.3 (current version)
General
@ref: 59274
BacDive-ID: 153924
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Aggregatibacter actinomycetemcomitans CCUG 51668 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Human dental plaque.
NCBI tax id
- NCBI tax id: 714
- Matching level: species
doi: 10.13145/bacdive153924.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Aggregatibacter
- species: Aggregatibacter actinomycetemcomitans
- full scientific name: Aggregatibacter actinomycetemcomitans (Klinger 1912) Nørskov-Lauritsen and Kilian 2006
synonyms
@ref synonym 20215 Haemophilus actinomycetemcomitans 20215 Bacterium actinomycetemcomitans 20215 Actinobacillus actinomycetemcomitans
@ref: 59274
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Aggregatibacter
species: Aggregatibacter actinomycetemcomitans
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | negative | 97.8 | |
| 125438 | 90.488 | no | |
| 125438 | negative | 97.582 |
Culture and growth conditions
culture temp
- @ref: 59274
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 59274
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 98.9 |
| 125438 | no | 92.602 |
Isolation, sampling and environmental information
isolation
- @ref: 59274
- sample type: Human dental plaque
- country: Finland
- origin.country: FIN
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Plaque |
| #Host Body Product | #Oral cavity and Airways | #Dental plaque |
Sequence information
16S sequences
- @ref: 124043
- description: Aggregatibacter actinomycetemcomitans partial 16S rRNA gene, strain HG3907/HK929/CCUG 51668, serovar E
- accession: FN547979
- length: 1199
- database: nuccore
- NCBI tax ID: 714
Genome sequences
- @ref: 66792
- description: Aggregatibacter actinomycetemcomitans strain HK_929
- accession: 714.286
- assembly level: wgs
- database: patric
- NCBI tax ID: 714
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.582 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.654 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 86.32 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 92.602 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.5 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90.488 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 75.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 97.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 79.7 |
External links
@ref: 59274
culture collection no.: CCUG 51668
straininfo link
- @ref: 107650
- straininfo: 303003
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 59274 | Curators of the CCUG | https://www.ccug.se/strain?id=51668 | Culture Collection University of Gothenburg (CCUG) (CCUG 51668) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 107650 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID303003.1 | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |