Strain identifier
BacDive ID: 15384
Type strain: 
Species: Streptomyces longisporus
Strain Designation: 4417/56
Strain history: KCC S-0395 <-- IFO 12885 <-- SAJ <-- ISP 5166 <-- INA 4417/56.
NCBI tax ID(s): 1948 (species)
version 8.1 (current version)
General
@ref: 9362
BacDive-ID: 15384
DSM-Number: 40166
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces longisporus 4417/56 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1948
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9362 | <- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA |
| 67770 | KCC S-0395 <-- IFO 12885 <-- SAJ <-- ISP 5166 <-- INA 4417/56. |
doi: 10.13145/bacdive15384.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces longisporus
- full scientific name: Streptomyces longisporus (Krassilnikov 1941) Waksman 1953 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Actinomyces longisporus
@ref: 9362
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces longisporus
full scientific name: Streptomyces longisporus (Krassilnikov 1941) Waksman 1953
strain designation: 4417/56
type strain: yes
Culture and growth conditions
culture medium
- @ref: 9362
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9362 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
- @ref: 9362
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9362
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces longisporus partial 16S rRNA gene, strain ISP 5166 | AJ399475 | 1448 | ena | 1948 |
| 20218 | Streptomyces longisporus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4395 | D44110 | 120 | ena | 1948 |
| 20218 | Streptomyces longisporus gene for 16S rRNA, partial sequence, strain: NBRC 12885 | AB184219 | 1445 | ena | 1948 |
GC content
- @ref: 67770
- GC-content: 70.2
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 9362
culture collection no.: DSM 40166, ATCC 23931, CBS 916.68, IFO 12885, INA 4417/56, ISP 5166, JCM 4395, NBRC 12885, RIA 1134, BCRC 13776, CCT 5006, CGMCC 4.1738, IMET 43090, NRRL B-5336, PCM 2394, VKM Ac-1896
straininfo link
- @ref: 84474
- straininfo: 389363
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20525817 | Streptomyces coacervatus sp. nov., isolated from the intestinal tract of Armadillidium vulgare. | Shibazaki A, Omoto Y, Kudo T, Yaguchi T, Saito A, Ando A, Mikami Y, Gonoi T | Int J Syst Evol Microbiol | 10.1099/ijs.0.019091-0 | 2010 | Animals, DNA, Bacterial/genetics, Fatty Acids/metabolism, Intestines/microbiology, Isopoda/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/*classification/genetics/*isolation & purification/metabolism | Metabolism |
| Phylogeny | 32375929 | Streptomyces montanus sp. nov., a novel actinomycete isolated from soil. | Jiang H, Han L, Li J, Yu M, Zhao J, Guo X, Xiang W, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004160 | 2020 | Actinobacteria/genetics, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9362 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40166) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40166 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 84474 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389363.1 | StrainInfo: A central database for resolving microbial strain identifiers |