Strain identifier

BacDive ID: 15379

Type strain: Yes

Species: Streptomyces longisporoflavus

Strain history: KCC S-0396 <-- IFO 12886 <-- SAJ <-- ISP 5165 <-- INA 81/53.

NCBI tax ID(s): 28044 (species)

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General

@ref: 9361

BacDive-ID: 15379

DSM-Number: 40165

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces longisporoflavus DSM 40165 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 28044
  • Matching level: species

strain history

@refhistory
9361<- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA
67770KCC S-0396 <-- IFO 12886 <-- SAJ <-- ISP 5165 <-- INA 81/53.

doi: 10.13145/bacdive15379.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces longisporoflavus
  • full scientific name: Streptomyces longisporoflavus Waksman 1953 (Approved Lists 1980)

@ref: 9361

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces longisporoflavus

full scientific name: Streptomyces longisporoflavus Waksman 1953

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9361ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
9361GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18551positiveoptimum28mesophilic
9361positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1855117234glucose+
1855122599arabinose+
1855117992sucrose-
1855118222xylose+
1855117268myo-inositol+/-
1855129864mannitol+
1855128757fructose+
1855126546rhamnose+
1855116634raffinose-
1855162968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18551+++++-++--+

Isolation, sampling and environmental information

isolation

  • @ref: 9361
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185511German classification
93611Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces longisporoflavus strain NRRL ISP-5165 16S ribosomal RNA gene, partial sequenceEF1786871484ena28044
20218Streptomyces longisporoflavus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4396D44111120ena28044
9361UNVERIFIED_ORG: Streptomyces longisporoflavus strain NRRL ISP-5165T 16S ribosomal RNA gene, partial sequenceDQ4425201456ena28044
9361Streptomyces longisporoflavus gene for 16S rRNA, partial sequence, strain: NBRC 12886AB1842201413ena28044

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces longisporoflavus JCM 4396GCA_014649775scaffoldncbi28044
66792Streptomyces longisporoflavus strain JCM 439628044.4wgspatric28044

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.477no
gram-positiveyes88.254no
anaerobicno99.438no
aerobicyes93.501no
halophileno92.456no
spore-formingyes94.557no
glucose-utilyes89.017yes
thermophileno99.427no
motileno92.717no
glucose-fermentno85.992no

External links

@ref: 9361

culture collection no.: DSM 40165, ATCC 19915, CBS 915.68, IFO 12886, INA 81/53, ISP 5165, NBRC 12886, RIA 1133, JCM 4396, ATCC 19781, ATCC 23932, BCRC 13775, CGMCC 4.1453, IMET 43506, LMG 19347, NRRL ISP-5165, RIA 312, VKM Ac-1003

straininfo link

  • @ref: 84469
  • straininfo: 14114

literature

  • topic: Phylogeny
  • Pubmed-ID: 2125590
  • title: Duramycins B and C, two new lanthionine containing antibiotics as inhibitors of phospholipase A2. Structural revision of duramycin and cinnamycin.
  • authors: Fredenhagen A, Fendrich G, Marki F, Marki W, Gruner J, Raschdorf F, Peter HH
  • journal: J Antibiot (Tokyo)
  • DOI: 10.7164/antibiotics.43.1403
  • year: 1990
  • mesh: Amino Acid Sequence, Amino Acids/analysis, *Anti-Bacterial Agents/*chemistry/isolation & purification/*pharmacology, Antimicrobial Cationic Peptides, Bacillus subtilis/drug effects, Bacteriocins, Chromatography, High Pressure Liquid, Humans, Magnetic Resonance Spectroscopy, Mass Spectrometry, Molecular Sequence Data, Molecular Structure, Neutrophils/enzymology, Peptides/chemistry/isolation & purification/*pharmacology, *Peptides, Cyclic, Phospholipases A/*antagonists & inhibitors, Phospholipases A2, Protein Conformation, Stereoisomerism, Streptomyces/classification/metabolism, Streptomycetaceae/classification/metabolism, Structure-Activity Relationship
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9361Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40165)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40165
18551Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40165.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84469Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14114.1StrainInfo: A central database for resolving microbial strain identifiers