Strain identifier

BacDive ID: 153654

Type strain: No

Species: Shewanella algae

NCBI tax ID(s): 38313 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 58886

BacDive-ID: 153654

keywords: Bacteria, aerobe, mesophilic

description: Shewanella algae CCUG 50501 is an aerobe, mesophilic bacterium that was isolated from Human wound,15-yr-old female,tsunami victim.

NCBI tax id

  • NCBI tax id: 38313
  • Matching level: species

doi: 10.13145/bacdive153654.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella algae
  • full scientific name: Shewanella algae corrig. Simidu et al. 1990
  • synonyms

    @refsynonym
    20215Shewanella haliotis
    20215Shewanella alga
    20215Shewanella upenei

@ref: 58886

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella algae

type strain: no

Culture and growth conditions

culture temp

  • @ref: 58886
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58886
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    58886C11:00.411
    58886C12:01.512
    58886C13:01.513
    58886C14:00.914
    58886C15:08.615
    58886C16:05.716
    58886C17:03.117
    58886C18:00.318
    58886C11:0 3OH0.612.441
    58886C12:0 3OH1.113.455
    58886C13:0 3OH/C15:1 i I/H1.814.469
    58886C13:0 iso5.212.612
    58886C13:0 ISO 3OH2.114.11
    58886C14:0 3OH/C16:1 ISO I0.515.485
    58886C14:0 ISO1.113.618
    58886C15:0 ANTEISO0.314.711
    58886C15:0 ISO26.514.621
    58886C15:0 ISO 3OH0.416.135
    58886C15:1 ω6c0.714.856
    58886C15:1 ω8c0.914.792
    58886C16:0 iso0.515.626
    58886C16:1 ω7c9.615.819
    58886C16:1 ω9c1.115.774
    58886C17:0 iso116.629
    58886C17:1 ω6c116.862
    58886C17:1 ω8c19.316.792
    58886C17:1 ω9c ISO0.316.416
    58886C18:1 ω7c /12t/9t1.417.824
    58886C18:1 ω9c1.817.769
    58886C18:2 ω6,9c/C18:0 ANTE0.917.724
    58886Unidentified0.213.14
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
58886-+++-+--++++-----+--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
58886+----++-----+--+-+--+

Isolation, sampling and environmental information

isolation

  • @ref: 58886
  • sample type: Human wound,15-yr-old female,tsunami victim
  • sampling date: 1904-12-31
  • country: Thailand
  • origin.country: THA
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Human#Child
#Host Body-Site#Other#Wound
#Infection#Patient
#Host#Human#Female

External links

@ref: 58886

culture collection no.: CCUG 50501

straininfo link

  • @ref: 107424
  • straininfo: 214489

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
58886Curators of the CCUGhttps://www.ccug.se/strain?id=50501Culture Collection University of Gothenburg (CCUG) (CCUG 50501)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
107424Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID214489.1