Strain identifier
version 8.1 (current version)
General
@ref: 58886
BacDive-ID: 153654
keywords: Bacteria, aerobe, mesophilic
description: Shewanella algae CCUG 50501 is an aerobe, mesophilic bacterium that was isolated from Human wound,15-yr-old female,tsunami victim.
NCBI tax id
- NCBI tax id: 38313
- Matching level: species
doi: 10.13145/bacdive153654.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella algae
- full scientific name: Shewanella algae corrig. Simidu et al. 1990
synonyms
@ref synonym 20215 Shewanella haliotis 20215 Shewanella alga 20215 Shewanella upenei
@ref: 58886
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella algae
type strain: no
Culture and growth conditions
culture temp
- @ref: 58886
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 58886
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 58886 C11:0 0.4 11 58886 C12:0 1.5 12 58886 C13:0 1.5 13 58886 C14:0 0.9 14 58886 C15:0 8.6 15 58886 C16:0 5.7 16 58886 C17:0 3.1 17 58886 C18:0 0.3 18 58886 C11:0 3OH 0.6 12.441 58886 C12:0 3OH 1.1 13.455 58886 C13:0 3OH/C15:1 i I/H 1.8 14.469 58886 C13:0 iso 5.2 12.612 58886 C13:0 ISO 3OH 2.1 14.11 58886 C14:0 3OH/C16:1 ISO I 0.5 15.485 58886 C14:0 ISO 1.1 13.618 58886 C15:0 ANTEISO 0.3 14.711 58886 C15:0 ISO 26.5 14.621 58886 C15:0 ISO 3OH 0.4 16.135 58886 C15:1 ω6c 0.7 14.856 58886 C15:1 ω8c 0.9 14.792 58886 C16:0 iso 0.5 15.626 58886 C16:1 ω7c 9.6 15.819 58886 C16:1 ω9c 1.1 15.774 58886 C17:0 iso 1 16.629 58886 C17:1 ω6c 1 16.862 58886 C17:1 ω8c 19.3 16.792 58886 C17:1 ω9c ISO 0.3 16.416 58886 C18:1 ω7c /12t/9t 1.4 17.824 58886 C18:1 ω9c 1.8 17.769 58886 C18:2 ω6,9c/C18:0 ANTE 0.9 17.724 58886 Unidentified 0.2 13.14 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58886 | - | + | + | + | - | + | - | - | + | + | + | + | - | - | - | - | - | + | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58886 | + | - | - | - | - | + | + | - | - | - | - | - | + | - | - | + | - | + | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 58886
- sample type: Human wound,15-yr-old female,tsunami victim
- sampling date: 1904-12-31
- country: Thailand
- origin.country: THA
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Child |
#Host Body-Site | #Other | #Wound |
#Infection | #Patient | |
#Host | #Human | #Female |
External links
@ref: 58886
culture collection no.: CCUG 50501
straininfo link
- @ref: 107424
- straininfo: 214489
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
58886 | Curators of the CCUG | https://www.ccug.se/strain?id=50501 | Culture Collection University of Gothenburg (CCUG) (CCUG 50501) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
68369 | Automatically annotated from API 20NE | |||||
68382 | Automatically annotated from API zym | |||||
107424 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID214489.1 |