Strain identifier
BacDive ID: 153568
Type strain:
Species: Lactobacillus helveticus
Strain history: LMG 22464 <-- F. G. Priest; Heriot-Watt Univ., UK; SA <-- H. Ikemoto; Suntory Ltd., Japan; SA.
NCBI tax ID(s): 1587 (species)
General
@ref: 58785
BacDive-ID: 153568
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Lactobacillus helveticus CCUG 50205 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Malt whisky.
NCBI tax id
- NCBI tax id: 1587
- Matching level: species
strain history
- @ref: 67770
- history: LMG 22464 <-- F. G. Priest; Heriot-Watt Univ., UK; SA <-- H. Ikemoto; Suntory Ltd., Japan; SA.
doi: 10.13145/bacdive153568.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus helveticus
- full scientific name: Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980)
synonyms
@ref synonym 20215 Thermobacterium helveticum 20215 Lactobacillus suntoryeus
@ref: 58785
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus helveticus
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
58785 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 58785
- oxygen tolerance: anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.998 |
69481 | no | 100 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68371 | 17754 | glycerol | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 12936 | D-galactose | - | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | + | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 17814 | salicin | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17306 | maltose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 27082 | trehalose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 24265 | gluconate | - | builds acid from |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | + | fermentation |
68380 | 16634 | raffinose | + | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | - | energy source |
68381 | 29016 | arginine | - | hydrolysis |
68381 | 16988 | D-ribose | - | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | - | builds acid from |
68381 | 27082 | trehalose | - | builds acid from |
68381 | 16634 | raffinose | - | builds acid from |
68381 | 17992 | sucrose | + | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 606565 | hippurate | - | hydrolysis |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 27941 | pullulan | - | builds acid from |
68381 | 17306 | maltose | - | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | + | builds acid from |
68381 | 16443 | D-tagatose | - | builds acid from |
68381 | 16199 | urea | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68380 | 35581 | indole | no |
68381 | 15688 | acetoin | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test |
---|---|---|---|---|
68380 | 35581 | indole | - | |
68381 | 15688 | acetoin | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | + | 3.2.1.25 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | + | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | |
68381 | alkaline phosphatase | - | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | + | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | + | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | + | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | + | |
68380 | alkaline phosphatase | - | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | + | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | + | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 58785 C14:0 2.9 14 58785 C16:0 10.8 16 58785 C18:0 1.8 18 58785 C16:1 ω7c 6.1 15.819 58785 C17:1 ω8c 1 16.792 58785 C18:1 ω7c /12t/9t 4.6 17.824 58785 C18:1 ω9c 38.9 17.769 58785 C19:0 CYCLO ω9c 33.9 18.87 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58785 | - | - | - | - | - | + | - | - | - | - | + | + | - | + | - | - | + | - | - | - |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58785 | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | - | - | + | + | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58785 | - | - | - | + | - | - | + | - | - | - | + | + | - | - | - | - | - | + | - | - | - | + | - | - | + | - | - | - | - |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58785 | - | + | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | + | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
58785 | Malt whisky | |||
67770 | Malt whisky distilleries | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Fermented |
#Engineered | #Food production | #Beverage |
taxonmaps
- @ref: 69479
- File name: preview.99_206.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_146;97_157;98_175;99_206&stattab=map
- Last taxonomy: Lactobacillus
- 16S sequence: AY445815
- Sequence Identity:
- Total samples: 47444
- soil counts: 2173
- aquatic counts: 2250
- animal counts: 42256
- plant counts: 765
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
67770 | Lactobacillus suntoryeus 16S ribosomal RNA gene, partial sequence | AY445815 | 1498 | ena | 1587 |
67770 | Lactobacillus helveticus strain LMG 22464 16S-23S ribosomal RNA intergenic spacer, complete sequence | DQ123575 | 203 | ena | 1587 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactobacillus helveticus LMG 22464 | GCA_001437535 | scaffold | ncbi | 1587 |
66792 | Lactobacillus helveticus strain LMG 22464 | 1587.32 | wgs | patric | 1587 |
66792 | Lactobacillus suntoryeus LMG 22464 | 2660237987 | draft | img | 1587 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 98.185 | no |
gram-positive | yes | 94 | no |
anaerobic | yes | 79.383 | yes |
aerobic | no | 98.475 | yes |
halophile | yes | 86.229 | no |
spore-forming | no | 95.801 | no |
glucose-util | yes | 93.093 | no |
motile | no | 95.712 | no |
glucose-ferment | yes | 91.481 | no |
thermophile | no | 99.367 | yes |
External links
@ref: 58785
culture collection no.: CCUG 50205, NCIMB 14005, JCM 30912, BCRC 17499, LMG 22464
straininfo link
- @ref: 107349
- straininfo: 311068
literature
- topic: Phylogeny
- Pubmed-ID: 15653849
- title: Lactobacillus suntoryeus sp. nov., isolated from malt whisky distilleries.
- authors: Cachat E, Priest FG
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63266-0
- year: 2005
- mesh: Alcoholic Beverages/*microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Edible Grain/metabolism/*microbiology, Fermentation, Genes, rRNA, Lactobacillus/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA
- topic2: Metabolism
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
58785 | Curators of the CCUG | https://www.ccug.se/strain?id=50205 | Culture Collection University of Gothenburg (CCUG) (CCUG 50205) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68371 | Automatically annotated from API 50CH acid | |||
68380 | Automatically annotated from API rID32A | |||
68381 | Automatically annotated from API rID32STR | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
107349 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID311068.1 |