Strain identifier
BacDive ID: 15332
Type strain: 
Species: Streptomyces janthinus
Strain history: KCC S-0387 <-- IFO 12879 <-- SAJ <-- ISP 5206 <-- INMI 117.
NCBI tax ID(s): 67308 (species)
version 8.1 (current version)
General
@ref: 9379
BacDive-ID: 15332
DSM-Number: 40206
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Streptomyces janthinus DSM 40206 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 67308
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9379 | <- E.B. Shirling, ISP <- N.A. Krassilnikov, INMI |
| 67770 | KCC S-0387 <-- IFO 12879 <-- SAJ <-- ISP 5206 <-- INMI 117. |
doi: 10.13145/bacdive15332.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces janthinus
- full scientific name: Streptomyces janthinus (Artamonova and Krassilnikov 1960) Pridham 1970 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Actinomyces janthinus
@ref: 9379
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces janthinus
full scientific name: Streptomyces janthinus (Artamonova and Krassilnikov 1960) Pridham 1970
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 9379
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9379 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | continent |
|---|---|---|---|
| 9379 | soil | USSR | Asia |
| 67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9379
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces janthinus partial 16S rRNA gene, strain ISP 5206 | AJ399478 | 1448 | ena | 67308 |
| 20218 | Streptomyces janthinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4387 | D44102 | 121 | ena | 67308 |
| 20218 | Streptomyces purpurascens gene for 16S rRNA, partial sequence, strain: NBRC 12879 | AB184851 | 1477 | ena | 1924 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces janthinus JCM 4387 | GCA_014649675 | scaffold | ncbi | 67308 |
| 66792 | Streptomyces janthinus strain JCM 4387 | 67308.3 | wgs | patric | 67308 |
GC content
- @ref: 67770
- GC-content: 74.2
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | no | 97.585 | no |
| gram-positive | yes | 86.691 | no |
| anaerobic | no | 99.036 | no |
| aerobic | yes | 93.172 | no |
| halophile | no | 92.757 | no |
| spore-forming | yes | 95.345 | no |
| glucose-util | yes | 89.491 | no |
| thermophile | no | 98.509 | no |
| motile | no | 93.013 | no |
| glucose-ferment | no | 89.022 | no |
External links
@ref: 9379
culture collection no.: DSM 40206, ATCC 15870, ATCC 23925, CBS 909.68, IFO 12879, INMI 117, ISP 5206, KCC S-0387, NBRC 12879, RIA 1155, RIA 659, JCM 4387, BCRC 12074, CCT 5008, NRRL B-3365, VKM Ac-208
straininfo link
- @ref: 84425
- straininfo: 45593
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9379 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40206) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40206 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84425 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45593.1 | StrainInfo: A central database for resolving microbial strain identifiers |