Strain identifier
version 8.1 (current version)
General
@ref: 58451
BacDive-ID: 153302
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Helicobacter trogontum CCUG 49050 is a microaerophile, mesophilic bacterium of the family Helicobacteraceae.
NCBI tax id
- NCBI tax id: 50960
- Matching level: species
doi: 10.13145/bacdive153302.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter trogontum
- full scientific name: Helicobacter trogontum Mendes et al. 1996
@ref: 58451
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter trogontum
type strain: yes
Morphology
colony morphology
- @ref: 58451
- incubation period: 2-5 days
Culture and growth conditions
culture temp
- @ref: 58451
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 58451
- oxygen tolerance: microaerophile
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Helicobacter trogontum ATCC 700114 | GCA_000765905 | contig | ncbi | 50960 |
| 66792 | Helicobacter trogontum ATCC 700114 | 2671181141 | draft | img | 50960 |
External links
@ref: 58451
culture collection no.: CCUG 49050, ATCC 700114
straininfo link
- @ref: 107126
- straininfo: 100686
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 8863417 | Helicobacter trogontum sp. nov., isolated from the rat intestine. | Mendes EN, Queiroz DM, Dewhirst FE, Paster BJ, Moura SB, Fox JG | Int J Syst Bacteriol | 10.1099/00207713-46-4-916 | 1996 | Animals, Base Sequence, Helicobacter/genetics/*isolation & purification/metabolism, Intestines/*microbiology, Molecular Sequence Data, Polymerase Chain Reaction, RNA, Ribosomal, 16S/chemistry, Rats, Rats, Wistar | Genetics |
| Pathogenicity | 12543914 | Cytolethal distending toxin B gene (cdtB) homologues in taxa 2, 3 and 8 and in six canine isolates of Helicobacter sp. flexispira. | Kostia S, Veijalainen P, Hirvi U, Hanninen ML | J Med Microbiol | 10.1099/jmm.0.04920-0 | 2003 | Amino Acid Sequence, Animals, Bacterial Toxins/chemistry/*genetics/toxicity, Base Sequence, Blotting, Southern, DNA, Bacterial/chemistry, Dogs, Gene Amplification, HeLa Cells, Helicobacter/classification/*genetics/pathogenicity, Humans, Mice, Molecular Sequence Data, Peptide Fragments, Phylogeny, Polymerase Chain Reaction, Rats, Sequence Alignment, Sequence Homology, Amino Acid, Sheep, Swine | Phylogeny |
| Phylogeny | 12710608 | Helicobacter sp. flexispira 16S rDNA taxa 1, 4 and 5 and Finnish porcine Helicobacter isolates are members of the species Helicobacter trogontum (taxon 6). | Hanninen ML, Utriainen M, Happonen I, Dewhirst FE | Int J Syst Evol Microbiol | 10.1099/ijs.0.02389-0 | 2003 | Animals, Electrophoresis, Polyacrylamide Gel, Helicobacter/*classification/genetics, Intestinal Mucosa/*microbiology, Microscopy, Electron, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics, RNA, Ribosomal, 23S/analysis, Sequence Analysis, DNA, Swine | Enzymology |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 58451 | Curators of the CCUG | https://www.ccug.se/strain?id=49050 | Culture Collection University of Gothenburg (CCUG) (CCUG 49050) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 107126 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID100686.1 |