Strain identifier

BacDive ID: 15330

Type strain: Yes

Species: Streptomyces ipomoeae

Strain Designation: 9820

Strain history: <- E.B. Shirling, ISP <- W.J. Martin, 9820

NCBI tax ID(s): 103232 (species)

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General

@ref: 9482

BacDive-ID: 15330

DSM-Number: 40383

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces ipomoeae 9820 is a mesophilic bacterium that was isolated from soft rot of sweet potatoes.

NCBI tax id

  • NCBI tax id: 103232
  • Matching level: species

strain history

  • @ref: 9482
  • history: <- E.B. Shirling, ISP <- W.J. Martin, 9820

doi: 10.13145/bacdive15330.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces ipomoeae
  • full scientific name: Streptomyces ipomoeae (Person and Martin 1940) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces ipomoea

@ref: 9482

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces ipomoeae

full scientific name: Streptomyces ipomoeae (Person and Martin 1940) Waksman and Henrici 1948

strain designation: 9820

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9482GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9482ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
18586positiveoptimum28mesophilic
9482positivegrowth28mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1858617234glucose+
1858622599arabinose-
1858617992sucrose+
1858618222xylose-
1858617268myo-inositol-
1858629864mannitol-
1858628757fructose+
1858626546rhamnose-
1858616634raffinose+
1858662968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18586+++++-++--+

Isolation, sampling and environmental information

isolation

  • @ref: 9482
  • sample type: soft rot of sweet potatoes

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Decomposing plant
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2647.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_135;98_1456;99_2647&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AY207593
  • Sequence Identity:
  • Total samples: 412
  • soil counts: 303
  • aquatic counts: 18
  • animal counts: 44
  • plant counts: 47

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185861German classification
94821Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces ipomoeae strain CGMCC 4.1381 16S ribosomal RNA gene, partial sequenceJN5660171384ena103232
20218Streptomyces ipomoeae 16S ribosomal RNA gene, partial sequenceAY2075931490ena103232
20218Streptomyces ipomoeae strain DSM 40383 clone ITS 16S-23S ribosomal RNA intergenic spacer, partial sequenceAY297025270ena103232
20218Streptomyces ipomoeae strain DSM 40383 16S ribosomal RNA gene, partial sequenceAY9998401420ena103232
20218Streptomyces ipomoeae gene for 16S rRNA, partial sequence, strain: NBRC 13050AB1848571463ena103232

External links

@ref: 9482

culture collection no.: DSM 40383, ATCC 25462, CBS 695.69, CGMCC AS 4.1381, IFO 13050, ISP 5383, NBRC 13050, RIA 1242

straininfo link

  • @ref: 84423
  • straininfo: 389334

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29111972Streptomyces capitiformicae sp. nov., a novel actinomycete producing angucyclinone antibiotics isolated from the head of Camponotus japonicus Mayr.Jiang S, Piao C, Yu Y, Cao P, Li C, Yang F, Li M, Xiang W, Liu CInt J Syst Evol Microbiol10.1099/ijsem.0.0024682017Animals, Anthraquinones/*metabolism, Anti-Bacterial Agents/biosynthesis, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purificationTranscriptome
Phylogeny32941129Streptomyces arboris sp. nov., isolated from Populus euphratica wetland soil.Liu P, Xia Z, Zhang LInt J Syst Evol Microbiol10.1099/ijsem.0.0044302020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9482Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40383)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40383
18586Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40383.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84423Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389334.1StrainInfo: A central database for resolving microbial strain identifiers