Strain identifier

BacDive ID: 153201

Type strain: No

Species: Haemophilus pittmaniae

NCBI tax ID(s): 249188 (species)

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General

@ref: 58304

BacDive-ID: 153201

keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Haemophilus pittmaniae CCUG 48706 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Human urine.

NCBI tax id

  • NCBI tax id: 249188
  • Matching level: species

doi: 10.13145/bacdive153201.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Haemophilus
  • species: Haemophilus pittmaniae
  • full scientific name: Haemophilus pittmaniae Nørskov-Lauritsen et al. 2005

@ref: 58304

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Haemophilus

species: Haemophilus pittmaniae

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
125438no96.06
12543896.978negative

Culture and growth conditions

culture temp

  • @ref: 58304
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
58304microaerophile
125439microaerophile98.5

spore formation

@refspore formationconfidence
125439no99.5
125438no90.733

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837727897tryptophan-energy source
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837717992sucrose+builds acid from
6837717306maltose+builds acid from
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
68377tryptophan deaminase-4.1.99.1
68382cystine arylamidase-3.4.11.3
68377gamma-glutamyltransferase+2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase+3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase+3.5.2.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    58304C12:00.312
    58304C14:024.514
    58304C16:028.416
    58304C18:00.718
    58304C12:0 ALDE ?0.810.915
    58304C13:0 ISO 2OH0.413.814
    58304C14:0 3OH/C16:1 ISO I8.215.485
    58304C16:1 ω5c0.215.908
    58304C16:1 ω7c3215.819
    58304C18:1 ω9c1.517.769
    58304C18:2 ω6,9c/C18:0 ANTE1.817.724
    58304Unidentified0.113.766
    58304Unidentified0.413.939
    58304Unidentified0.215.178
    58304unknown 14.5030.514.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
58304-+---+----++--------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
58304+++++---++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 58304
  • sample type: Human urine
  • sampling date: 1994
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haemophilus pittmaniae NCTC13335GCA_900450865contigncbi249188
66792Haemophilus pittmaniae strain NCTC13335249188.6wgspatric249188
66792Haemophilus pittmaniae NCTC 133352808606716draftimg249188

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno96.978no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no90.852yes
125438spore-formingspore-formingAbility to form endo- or exosporesno90.733no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no88.461yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98yes
125438motile2+flagellatedAbility to perform flagellated movementno96.06no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno99.5
125439BacteriaNetmotilityAbility to perform movementno70.6
125439BacteriaNetgram_stainReaction to gram-stainingnegative82.4
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile98.5

External links

@ref: 58304

culture collection no.: CCUG 48706, NCTC 13335

straininfo link

  • @ref: 107041
  • straininfo: 214802

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
58304Curators of the CCUGhttps://www.ccug.se/strain?id=48706Culture Collection University of Gothenburg (CCUG) (CCUG 48706)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68377Automatically annotated from API NH
68382Automatically annotated from API zym
107041Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID214802.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG