Strain identifier
BacDive ID: 1532
Type strain:
Species: Lysinibacillus sphaericus
Strain Designation: Gibson 1013, 1013
Strain history: CIP <- 1965, ATCC <- R.E. Gordon, New Jersey Agri. Exper. Stat., New Brunswick, USA <- T. Gibson: strain 1013 <- Kràl Collection, Vienna, Austria <- M. Wund <- E. Neide
NCBI tax ID(s): 1354027 (strain), 1421 (species)
General
@ref: 2029
BacDive-ID: 1532
DSM-Number: 28
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped, human pathogen
description: Lysinibacillus sphaericus Gibson 1013 is an aerobe, spore-forming, mesophilic human pathogen that was isolated from Unknown source.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1354027 | strain |
1421 | species |
strain history
@ref | history |
---|---|
2029 | <- ATCC <- R.E. Gordon <- T. Gibson, 1013 <- Král Collection <- M. Wund <- E. Neide |
67770 | CCM 2120 <-- R. E. Gordon <-- T. Gibson 1013 <-- Král Collection <-- Wund <-- E. Neide. |
123252 | CIP <- 1965, ATCC <- R.E. Gordon, New Jersey Agri. Exper. Stat., New Brunswick, USA <- T. Gibson: strain 1013 <- Kràl Collection, Vienna, Austria <- M. Wund <- E. Neide |
doi: 10.13145/bacdive1532.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Lysinibacillus
- species: Lysinibacillus sphaericus
- full scientific name: Lysinibacillus sphaericus (Meyer and Neide 1904) Ahmed et al. 2007
synonyms
@ref synonym 20215 Lysinibacillus varians 20215 Bacillus sphaericus 20215 Lysinibacillus mangiferahumi 20215 Lysinibacillus mangiferihumi 20215 Lysinibacillus tabacifolii
@ref: 2029
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Lysinibacillus
species: Lysinibacillus sphaericus
full scientific name: Lysinibacillus sphaericus (Meyer and Neide 1904) Ahmed et al. 2007
strain designation: Gibson 1013, 1013
type strain: yes
Morphology
cell morphology
- @ref: 123252
- gram stain: positive
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 123252
- hemolysis ability: 1
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2029 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
35013 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
123252 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2029 | positive | growth | 30 | mesophilic |
35013 | positive | growth | 30 | mesophilic |
44997 | positive | growth | 30-37 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
123252 | positive | growth | 22-45 | |
123252 | no | growth | 10 | psychrophilic |
123252 | no | growth | 55 | thermophilic |
culture pH
- @ref: 123252
- ability: positive
- type: growth
- pH: 6
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
44997 | aerobe |
123252 | obligate aerobe |
spore formation
- @ref: 123252
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
123252 | NaCl | positive | growth | 0-4 % |
123252 | NaCl | no | growth | 6 % |
123252 | NaCl | no | growth | 8 % |
123252 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
123252 | citrate | - | carbon source | 16947 |
123252 | esculin | - | hydrolysis | 4853 |
123252 | hippurate | - | hydrolysis | 606565 |
123252 | nitrate | - | reduction | 17632 |
123252 | nitrite | - | reduction | 16301 |
123252 | nitrate | - | respiration | 17632 |
metabolite production
- @ref: 123252
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
123252 | 15688 | acetoin | - | |
123252 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
123252 | oxidase | + | |
123252 | beta-galactosidase | - | 3.2.1.23 |
123252 | alcohol dehydrogenase | - | 1.1.1.1 |
123252 | gelatinase | +/- | |
123252 | amylase | - | |
123252 | DNase | + | |
123252 | caseinase | - | 3.4.21.50 |
123252 | catalase | + | 1.11.1.6 |
123252 | tween esterase | + | |
123252 | gamma-glutamyltransferase | - | 2.3.2.2 |
123252 | lecithinase | - | |
123252 | lipase | - | |
123252 | lysine decarboxylase | - | 4.1.1.18 |
123252 | ornithine decarboxylase | - | 4.1.1.17 |
123252 | protease | - | |
123252 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123252 | - | + | + | + | - | + | - | + | - | + | + | - | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123252 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123252 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 123252
- sample type: Unknown source
taxonmaps
- @ref: 69479
- File name: preview.99_4772.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_503;97_577;98_664;99_4772&stattab=map
- Last taxonomy: Lysinibacillus
- 16S sequence: AJ310084
- Sequence Identity:
- Total samples: 337
- soil counts: 72
- aquatic counts: 49
- animal counts: 210
- plant counts: 6
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|---|
2029 | yes, in single cases | yes | 1 | Risk group (German classification) |
123252 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Bacillus sphaericus clone BSPH-1R 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF478090 | 540 | ena | 1421 |
20218 | Bacillus sphaericus 16S rRNA gene, strain DSM 28 | AJ310084 | 1515 | ena | 1421 |
20218 | Bacillus sphaericus strain ATCC 14577 16S ribosomal RNA gene, partial sequence | DQ286299 | 1419 | ena | 1421 |
20218 | Bacillus sphaericus complete 16S ribosomal RNA gene | L14010 | 1493 | ena | 1421 |
2029 | Bacillus sphaericus 16S ribosomal RNA gene, partial sequence | AF169495 | 1410 | ena | 1421 |
67770 | Bacillus sphaericus gene for 16S rRNA, partial sequence | AB271742 | 1477 | ena | 1421 |
67770 | Lysinibacillus sphaericus gene for 16S rRNA, strain: IAM 13420 | D16280 | 1484 | ena | 1421 |
67770 | B.sphaericus 16S ribosomal RNA | X60639 | 1430 | ena | 1421 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lysinibacillus sphaericus KCTC 3346 | 1354027.3 | wgs | patric | 1354027 |
66792 | Lysinibacillus sphaericus strain NBRC 15095 | 1421.85 | wgs | patric | 1421 |
66792 | Lysinibacillus sphaericus strain NCTC10338 | 1421.65 | wgs | patric | 1421 |
66792 | Lysinibacillus sphaericus NCTC 10338 | 2855314903 | draft | img | 1421 |
66792 | Lysinibacillus sphaericus KCTC 3346 | 2554235285 | draft | img | 1354027 |
67770 | Lysinibacillus sphaericus KCTC 3346 KCTC 3346(T) | GCA_000427235 | contig | ncbi | 1354027 |
67770 | Lysinibacillus sphaericus NBRC 15095 | GCA_006539805 | contig | ncbi | 1421 |
67770 | Lysinibacillus sphaericus DSM 28 | GCA_002982115 | complete | ncbi | 1421 |
67770 | Lysinibacillus sphaericus NRRL B-23268 | GCA_005217555 | contig | ncbi | 1421 |
67770 | Lysinibacillus sphaericus NCTC10338 | GCA_900445465 | contig | ncbi | 1421 |
GC content
@ref | GC-content | method |
---|---|---|
2029 | 37.3 | thermal denaturation, midpoint method (Tm) |
2029 | 37.1 | Buoyant density centrifugation (BD) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 85.24 | no |
gram-positive | yes | 90.08 | no |
anaerobic | no | 95.957 | no |
halophile | no | 91.681 | no |
spore-forming | yes | 96.58 | no |
thermophile | no | 99.922 | no |
glucose-util | yes | 84.578 | no |
flagellated | yes | 80.105 | no |
aerobic | yes | 87.917 | yes |
glucose-ferment | no | 89.599 | no |
External links
@ref: 2029
culture collection no.: DSM 28, ATCC 14577, CCM 2120, JCM 2502, NCIB 9370, NCTC 10338, CCUG 7428, LMG 7134, BCRC 12825, CECT 33, CIP 65.30, IAM 13420, IFO 15095, KCTC 3346, NBRC 15095, NCCB 75018, NCIMB 9370, NRRL B-23268, VKM B-509, NCDO 1767
straininfo link
- @ref: 71178
- straininfo: 7137
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 4015092 | Substrate-induced changes in sulfhydryl reactivity of bacterial D-amino acid transaminase. | Soper TS, Ueno H, Manning JM | Arch Biochem Biophys | 10.1016/0003-9861(85)90001-3 | 1985 | Bacillus/enzymology, Bacteria/*enzymology, Binding Sites, D-Alanine Transaminase, *Disulfides, Dithionitrobenzoic Acid/pharmacology, Ethylamines/pharmacology, Hydrogen-Ion Concentration, Kinetics, Propionates/pharmacology, Protein Conformation, Pyridines/pharmacology, Sulfhydryl Compounds/*metabolism, Sulfhydryl Reagents/pharmacology, Transaminases/antagonists & inhibitors/*metabolism | Metabolism |
Pathogenicity | 8922635 | 2-D protein crystals as an immobilization matrix for producing reaction zones in dipstick-style immunoassays. | Breitwieser A, Kupcu S, Howorka S, Weigert S, Langer C, Hoffmann-Sommergruber K, Scheiner O, Sleytr UB, Sara M | Biotechniques | 10.2144/96215rr05 | 1996 | Antibodies, Monoclonal/analysis, Bacillus, Bacterial Proteins, Crystallization, Humans, Immunoassay/*methods, Immunoglobulin G/analysis, Staphylococcal Protein A, Streptavidin | |
Pathogenicity | 9055417 | Comparison of the cellular fatty acid composition of a bacterium isolated from a human and alleged to be Bacillus sphaericus with that of Bacillus sphaericus isolated from a mosquito larvicide. | Siegel JP, Smith AR, Novak RJ | Appl Environ Microbiol | 10.1128/aem.63.3.1006-1010.1997 | 1997 | Animals, Bacillus/*chemistry/*classification, Culicidae, Fatty Acids/*analysis, Humans, Larva, Lung/microbiology, Pest Control, Biological, Reproducibility of Results | Phylogeny |
Phylogeny | 12901420 | Genetic polymorphism by RAPD-PCR and phenotypic characteristics of isolated thermotolerant Bacillus strains from hot spring sources. | Hazem A, Manar A | New Microbiol | 2003 | Bacillus/*classification/*genetics/metabolism, Cluster Analysis, DNA Fingerprinting, DNA, Bacterial/chemistry/genetics, Hot Temperature, Hydrogen-Ion Concentration, Jordan, Microbial Sensitivity Tests, Phenotype, Phylogeny, Polymorphism, Genetic, Random Amplified Polymorphic DNA Technique, *Water Microbiology | Stress | |
Phylogeny | 17473244 | Bacillus decisifrondis sp. nov., isolated from soil underlying decaying leaf foliage. | Zhang L, Xu Z, Patel BKC | Int J Syst Evol Microbiol | 10.1099/ijs.0.64440-0 | 2007 | Amino Acids/metabolism, Australia, Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Cell Wall/ultrastructure, Culture Media, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Flagella/ultrastructure, Genes, rRNA/genetics, Hydrogen-Ion Concentration, Microscopy, Electron, Transmission, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Thymidine/metabolism, Trees, Uridine/metabolism | Metabolism |
Phylogeny | 17473269 | Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov. | Ahmed I, Yokota A, Yamazoe A, Fujiwara T | Int J Syst Evol Microbiol | 10.1099/ijs.0.63867-0 | 2007 | Bacillaceae/chemistry/*classification/genetics/metabolism, Bacterial Typing Techniques, Base Composition, Boron/metabolism, Cell Wall/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, *Soil Microbiology, Temperature | Metabolism |
Phylogeny | 19502328 | Lysinibacillus parviboronicapiens sp. nov., a low-boron-containing bacterium isolated from soil. | Miwa H, Ahmed I, Yokota A, Fujiwara T | Int J Syst Evol Microbiol | 10.1099/ijs.0.65455-0 | 2009 | Bacterial Typing Techniques, Base Composition, Boron/*metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genotype, Gram-Positive Asporogenous Rods/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Peptidoglycan/analysis, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Turkey | Genetics |
Enzymology | 22266829 | Cloning of the surface layer gene sllB from Bacillus sphaericus ATCC 14577 and its heterologous expression and purification. | Cui YB, Zhou Y, Liu WN, Chen QW, Ma GF, Shi WH, Wang YG, Yang L | Int J Mol Med | 10.3892/ijmm.2012.890 | 2012 | Amino Acid Sequence, Bacillus/*genetics/metabolism, Bacterial Proteins/*genetics/metabolism, Blotting, Western, *Cloning, Molecular, DNA Primers, DNA, Bacterial/genetics, Escherichia coli/genetics/isolation & purification, Gene Expression Regulation, Bacterial, Membrane Glycoproteins/*genetics/metabolism, Microscopy, Electron, Transmission, Molecular Sequence Data, Plasmids, Recombinant Proteins/genetics/metabolism, Sequence Analysis, DNA | Metabolism |
Phylogeny | 23435244 | Lysinibacillus contaminans sp. nov., isolated from surface water. | Kampfer P, Martin K, Glaeser SP | Int J Syst Evol Microbiol | 10.1099/ijs.0.049593-0 | 2013 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, *Water Microbiology | Genetics |
Genetics | 23950128 | Genome Sequence of Lysinibacillus sphaericus Strain KCTC 3346T. | Jeong H, Jeong DE, Sim YM, Park SH, Choi SK | Genome Announc | 10.1128/genomeA.00625-13 | 2013 | ||
Phylogeny | 25070216 | Lysinibacillus varians sp. nov., an endospore-forming bacterium with a filament-to-rod cell cycle. | Zhu C, Sun G, Chen X, Guo J, Xu M | Int J Syst Evol Microbiol | 10.1099/ijs.0.068320-0 | 2014 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Cycle, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 27595771 | Comparative genomics reveals Lysinibacillus sphaericus group comprises a novel species. | Gomez-Garzon C, Hernandez-Santana A, Dussan J | BMC Genomics | 10.1186/s12864-016-3056-9 | 2016 | Bacillus/*classification/genetics, Evolution, Molecular, Gene Transfer, Horizontal, Genome, Bacterial, Genomics/*methods, Phylogeny, Sequence Analysis, DNA/*methods, Species Specificity | Genetics |
Metabolism | 35834592 | A taxonomically representative strain collection to explore xenobiotic and secondary metabolism in bacteria. | Kontomina E, Garefalaki V, Fylaktakidou KC, Evmorfidou D, Eleftheraki A, Avramidou M, Udoh K, Panopoulou M, Felfoldi T, Marialigeti K, Fakis G, Boukouvala S | PLoS One | 10.1371/journal.pone.0271125 | 2022 | *Bacteria, Firmicutes, Proteobacteria, Secondary Metabolism, *Xenobiotics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2029 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
35013 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10215 | ||||
44997 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 7428) | https://www.ccug.se/strain?id=7428 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
71178 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID7137.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123252 | Curators of the CIP | Collection of Institut Pasteur (CIP 65.30) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2065.30 |